Evidence map›Paper›PMID 33767674›Full record

ArticleFrontiers in microbiology2021

Microbial Community Field Surveys Reveal Abundant

Dawn Chiniquy, Elle M Barnes, Jinglie Zhou, Kyle Hartman, Xiaohui Li, Amy Sheflin, Allyn Pella, Ellen Marsh, Jessica Prenni, Adam M Deutschbauer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. Complete genome sequence ofMicrobiology resource announcements · 2026
    Article
  2. mSphere · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. NovelBiotech (Basel (Switzerland)) · 2024
    Article
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  9. Article
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  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Dawn ChiniquyDepartment of Energy, Joint Genome Institute, Berkeley, CA, United States.
Elle M BarnesDepartment of Energy, Joint Genome Institute, Berkeley, CA, United States.
Jinglie ZhouDepartment of Energy, Joint Genome Institute, Berkeley, CA, United States.
Kyle HartmanDepartment of Energy, Joint Genome Institute, Berkeley, CA, United States.
Xiaohui LiDepartment of Energy, Joint Genome Institute, Berkeley, CA, United States.
Amy SheflinDepartment of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, CO, United States.
Allyn PellaDepartment of Agronomy and Horticulture and Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, United States.
Ellen MarshDepartment of Agronomy and Horticulture and Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, United States.
Jessica PrenniDepartment of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, CO, United States.
Adam M DeutschbauerDepartment of Agronomy and Horticulture and Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, United States.
Daniel P SchachtmanDepartment of Agronomy and Horticulture and Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, United States.
Susannah G TringeDepartment of Energy, Joint Genome Institute, Berkeley, CA, United States.
Joint Genome Institute · USUniversity of Nebraska–Lincoln · USColorado State University · USLawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While the root-associated microbiome is typically less diverse than the surrounding soil due to both plant selection and microbial competition for plant derived resources, it typically retains considerable complexity, harboring many hundreds of distinct bacterial species. Here, we report a time-dependent deviation from this trend in the rhizospheres of field grown sorghum. In this study, 16S rRNA amplicon sequencing was used to determine the impact of nitrogen fertilization on the development of the root-associated microbiomes of 10 sorghum genotypes grown in eastern Nebraska. We observed that early rhizosphere samples exhibit a significant reduction in overall diversity due to a high abundance of the bacterial genus

Indexed as

high-throughput 16S rRNA gene sequencingmicrobial profilingmicrobiomePseudomonasrhizosphere microbial communitiessorghum

Identifiers

PMID33767674
PMCPMC7985074
OpenAlexW3135793613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.