Evidence map›Paper›PMID 33762305›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Noncanonical immune response to the inhibition of DNA methylation by Staufen1 via stabilization of endogenous retrovirus RNAs.

Yongsuk Ku, Joo-Hwan Park, Ryeongeun Cho, Yongki Lee, Hyoung-Min Park, MinA Kim, Kyunghoon Hur, Soo Young Byun, Jun Liu, Young-Suk Lee and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Yongsuk KuDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.ORCID 0000-0002-9798-475X
Joo-Hwan ParkDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul 03080, Korea.ORCID 0000-0002-3631-6029
Ryeongeun ChoDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.
Yongki LeeDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.
Hyoung-Min ParkDepartment of Biochemistry, BK21 Plus and Research Institute for Veterinary Science, School of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
MinA KimDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.
Kyunghoon HurDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.
Soo Young ByunScreening Discovery Platform, Translation Research Division, Institut Pasteur Korea, Gyeonggi 13488, Korea.
Jun LiuDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul 03080, Korea.ORCID 0000-0002-4889-2269
Young-Suk LeeDepartment of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea.
David ShumScreening Discovery Platform, Translation Research Division, Institut Pasteur Korea, Gyeonggi 13488, Korea.
Dong-Yeop ShinDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul 03080, Korea.
Youngil KohDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul 03080, Korea.
Je-Yoel ChoDepartment of Biochemistry, BK21 Plus and Research Institute for Veterinary Science, School of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
Sung-Soo YoonDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul 03080, Korea.
Junshik HongDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul 03080, Korea; hongjblood@snu.ac.kr ysyoosik@kaist.ac.kr.ORCID 0000-0002-7829-397X
Yoosik KimDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea; hongjblood@snu.ac.kr ysyoosik@kaist.ac.kr.
Korea Advanced Institute of Science and Technology · KRSeoul National University Hospital · KRInstitut Pasteur Korea · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA-methyltransferase inhibitors (DNMTis), such as azacitidine and decitabine, are used clinically to treat myelodysplastic syndrome (MDS) and acute myeloid leukemia (AML). Decitabine activates the transcription of endogenous retroviruses (ERVs), which can induce immune response by acting as cellular double-stranded RNAs (dsRNAs). Yet, the posttranscriptional regulation of ERV dsRNAs remains uninvestigated. Here, we find that the viral mimicry and subsequent cell death in response to decitabine require the dsRNA-binding protein Staufen1 (Stau1). We show that Stau1 directly binds to ERV RNAs and stabilizes them in a genome-wide manner. Furthermore, Stau1-mediated stabilization requires a long noncoding RNA TINCR, which enhances the interaction between Stau1 and ERV RNAs. Analysis of a clinical patient cohort reveals that MDS and AML patients with lower Stau1 and TINCR expressions exhibit inferior treatment outcomes to DNMTi therapy. Overall, our study reveals the posttranscriptional regulatory mechanism of ERVs and identifies the Stau1-TINCR complex as a potential target for predicting the efficacy of DNMTis and other drugs that rely on dsRNAs.

Indexed as

AdultAgedAged, 80 and overAntimetabolites, AntineoplasticAzacitidineCohort StudiesCytoskeletal ProteinsDecitabineDNA MethylationDrug Resistance, NeoplasmEndogenous RetrovirusesFemaleGene Expression Regulation, LeukemicGene Knockout TechniquesHCT116 CellsHumansAntimetabolites, AntineoplasticAzacitidineCytoskeletal ProteinsDecitabineRNA-Binding ProteinsRNA, Double-StrandedRNA, Long NoncodingRNA, ViralSTAU1 protein, humanTINCR lncRNA, humanDNA demethylationdouble-stranded RNAsnoncoding RNAposttranscriptional regulationRNA-binding protein

Identifiers

PMID33762305
PMCPMC8020767
OpenAlexW3137943541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.