Evidence map›Paper›PMID 33762012›Full record

ArticleCancer & metabolism2021

Mutant IDH and non-mutant chondrosarcomas display distinct cellular metabolomes.

Sinthu Pathmanapan, Olga Ilkayeva, John T Martin, Adrian Kwan Ho Loe, Hongyuan Zhang, Guo-Fang Zhang, Christopher B Newgard, Jay S Wunder, Benjamin A Alman

Open access · goldAbstract read
In one paragraph

Article in Cancer & metabolism, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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  12. Expression and Prognostic Role of PANK1 in Glioma.Combinatorial chemistry & high throughput screening · 2024
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  16. Distinct Roles of Glutamine Metabolism in Benign and Malignant Cartilage Tumors With IDH Mutations.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Sinthu PathmanapanDevelopmental and Stem Cell Biology, Hospital for Sick Children, Toronto, ON, Canada.
Olga IlkayevaDepartment of Pharmacology & Cancer Biology, Duke University, Durham, NC, USA.
John T MartinDepartment of Orthopaedic Surgery, Duke University, 311 Trent, Durham, NC, 27710, USA.
Adrian Kwan Ho LoeDevelopmental and Stem Cell Biology, Hospital for Sick Children, Toronto, ON, Canada.
Hongyuan ZhangDepartment of Orthopaedic Surgery, Duke University, 311 Trent, Durham, NC, 27710, USA.
Guo-Fang ZhangSarah W. Stedman Nutrition and Metabolism Center and Duke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, USA.
Christopher B NewgardDepartment of Pharmacology & Cancer Biology, Duke University, Durham, NC, USA.
Jay S WunderLunenfeld-Tanenbaum Research Institute, and the University Musculoskeletal Oncology Unit, Mount Sinai Hospital, Toronto, ON, Canada.
Benjamin A AlmanDepartment of Orthopaedic Surgery, Duke University, 311 Trent, Durham, NC, 27710, USA. ben.alman@duke.edu.ORCID http://orcid.org/0000-0002-7302-122X
Duke University · USHospital for Sick Children · CAMount Sinai Hospital · CAUniversity of Toronto · CA

Funding

Molecular Etiology of Enchondromatosis: Hedgehog Regulation in ChondrocytesR01AR066765 · NIAMS · DUKE UNIVERSITY · PI ALMAN, BENJAMIN AARON · 2014 to 2025
$3.7M
Exercise-induced recovery of intervertebral disc healthK99AR077685 · NIAMS · DUKE UNIVERSITY · PI MARTIN, JOHN · 2020 to 2021
$167k
CIHR MOP- 37913NIAMS NIH HHS K99 AR077685NIAMS NIH HHS R01 AR066765NIH HHS R01 AR066765
6 · The paper itself

Abstract

backgroundMajority of chondrosarcomas are associated with a number of genetic alterations, including somatic mutations in isocitrate dehydrogenase 1 (IDH1) and IDH2 genes, but the downstream effects of these mutated enzymes on cellular metabolism and tumor energetics are unknown. As IDH mutations are likely to be involved in malignant transformation of chondrosarcomas, we aimed to exploit metabolomic changes in IDH mutant and non-mutant chondrosarcomas.

methodsHere, we profiled over 69 metabolites in 17 patient-derived xenografts by targeted mass spectrometry to determine if metabolomic differences exist in mutant IDH1, mutant IDH2, and non-mutant chondrosarcomas. UMAP (Uniform Manifold Approximation and Projection) analysis was performed on our dataset to examine potential similarities that may exist between each chondrosarcoma based on genotype.

resultsUMAP revealed that mutant IDH chondrosarcomas possess a distinct metabolic profile compared with non-mutant chondrosarcomas. More specifically, our targeted metabolomics study revealed large-scale differences in organic acid intermediates of the tricarboxylic acid (TCA) cycle, amino acids, and specific acylcarnitines in chondrosarcomas. Lactate and late TCA cycle intermediates were elevated in mutant IDH chondrosarcomas, suggestive of increased glycolytic metabolism and possible anaplerotic influx to the TCA cycle. A broad elevation of amino acids was found in mutant IDH chondrosarcomas. A few acylcarnitines of varying carbon chain lengths were also elevated in mutant IDH chondrosarcomas, but with minimal clustering in accordance with tumor genotype. Analysis of previously published gene expression profiling revealed increased expression of several metabolism genes in mutant IDH chondrosarcomas, which also correlated to patient survival.

conclusionsOverall, our findings suggest that IDH mutations induce global metabolic changes in chondrosarcomas and shed light on deranged metabolic pathways.

Indexed as

AcylcarnitinesAmino acidsCancerChondrosarcomaGenetic mutationGlycolysisMetabolismMutant IDHTCA cycle

Identifiers

PMID33762012
PMCPMC7992867
OpenAlexW3136889170

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.