Evidence map›Paper›PMID 33761349›Full record

ArticleCell reports2021

Tunable, division-independent control of gene activation timing by a polycomb switch.

Nicholas A Pease, Phuc H B Nguyen, Marcus A Woodworth, Kenneth K H Ng, Blythe Irwin, Joshua C Vaughan, Hao Yuan Kueh

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Chromatin enables precise and scalable gene regulation with factors of limited specificity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
  4. Article
  5. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  6. T-cell commitment inheritance-an agent-based multi-scale model.NPJ systems biology and applications · 2024
    Article
  7. Two-way feedback between chromatin compaction and histone modification state explainsProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Epigenetic control and manipulation of neuronal maturation timing.Current opinion in genetics & development · 2024
    Review
  9. Article
  10. Review
  11. Antigen perception in T cells by long-term Erk and NFAT signaling dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. T-cell commitment inheritance - an agent-based multi-scale model.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nicholas A PeaseDepartment of Bioengineering, University of Washington, Seattle, WA 98195, USA; Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA.
Phuc H B NguyenDepartment of Bioengineering, University of Washington, Seattle, WA 98195, USA; Molecular Engineering and Sciences Institute, University of Washington, Seattle, WA 98195, USA.
Marcus A WoodworthBiological Physics, Structure and Design Program, University of Washington, Seattle, WA 98195, USA; Department of Chemistry, University of Washington, Seattle, WA 98195, USA.
Kenneth K H NgDepartment of Bioengineering, University of Washington, Seattle, WA 98195, USA.
Blythe IrwinDepartment of Bioengineering, University of Washington, Seattle, WA 98195, USA.
Joshua C VaughanDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA; Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA.
Hao Yuan KuehDepartment of Bioengineering, University of Washington, Seattle, WA 98195, USA; Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA 98195, USA. Electronic address: kueh@uw.edu.
University of Washington · US

Funding

A chromatin-based timer controlling T-cell developmentR01HL146478 · NHLBI · UNIVERSITY OF WASHINGTON · PI KUEH, HAO YUAN · 2020 to 2024
$1.9M
Single-cell analysis of immune cell fate decision makingR00HL119638 · NHLBI · UNIVERSITY OF WASHINGTON · PI KUEH, HAO YUAN · 2016 to 2018
$747k
Epigenetic Profiling of Single Cells by In Situ Labeling for Studying HematopoiesisF31HL142132 · NHLBI · UNIVERSITY OF WASHINGTON · PI WOODWORTH, MARCUS · 2018 to 2021
$173k
Regulation of hematopoiesis by epigenetic timing controlF31HL151090 · NHLBI · UNIVERSITY OF WASHINGTON · PI PEASE, NICHOLAS · 2020 to 2020
$38k
NHLBI NIH HHS F31 HL142132NHLBI NIH HHS F31 HL151090NHLBI NIH HHS R00 HL119638NHLBI NIH HHS R01 HL146478
6 · The paper itself

Abstract

During development, progenitors often differentiate many cell generations after receiving signals. These delays must be robust yet tunable for precise population size control. Polycomb repressive mechanisms, involving histone H3 lysine-27 trimethylation (H3K27me3), restrain the expression of lineage-specifying genes in progenitors and may delay their activation and ensuing differentiation. Here, we elucidate an epigenetic switch controlling the T cell commitment gene Bcl11b that holds its locus in a heritable inactive state for multiple cell generations before activation. Integrating experiments and modeling, we identify a mechanism where H3K27me3 levels at Bcl11b, regulated by methyltransferase and demethylase activities, set the time delay at which the locus switches from a compacted, silent state to an extended, active state. This activation delay robustly spans many cell generations, is tunable by chromatin modifiers and transcription factors, and is independent of cell division. With their regulatory flexibility, such timed epigenetic switches may broadly control timing in development.

Indexed as

AnimalsCell DivisionCell LineageEpigenesis, GeneticGenetic LociHistonesHumansLysineMethylationMiceMice, Inbred C57BLPolycomb-Group ProteinsProtein ConformationRepressor ProteinsTime FactorsT-LymphocytesBcl11b protein, mouseHistonesLysinePolycomb-Group ProteinsRepressor ProteinsTranscription FactorsTumor Suppressor Proteinschromatin compactionepigenetic switchgene regulationpost-translational histone modificationsstochasticityT cell developmenttiming controltunability

Identifiers

PMID33761349
PMCPMC8024876
OpenAlexW3137482340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.