Evidence map›Paper›PMID 33759506›Full record

ArticleEnvironmental science & technology2021

Sewage, Salt, Silica, and SARS-CoV-2 (4S): An Economical Kit-Free Method for Direct Capture of SARS-CoV-2 RNA from Wastewater.

Oscar N Whitney, Lauren C Kennedy, Vinson B Fan, Adrian Hinkle, Rose Kantor, Hannah Greenwald, Alexander Crits-Christoph, Basem Al-Shayeb, Mira Chaplin, Anna C Maurer and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Environmental science & technology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 2 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 2 syntheses or guidelines pooled it, 98 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Oscar N WhitneyDepartment of Molecular and Cell Biology, University of California, Berkeley, California 94720-1710, United States.ORCID 0000-0002-4858-2615
Lauren C KennedyDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1710, United States.ORCID 0000-0002-4451-2361
Vinson B FanDepartment of Molecular and Cell Biology, University of California, Berkeley, California 94720-1710, United States.
Adrian HinkleDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1710, United States.
Rose KantorDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1710, United States.ORCID 0000-0002-5402-8979
Hannah GreenwaldDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1710, United States.
Alexander Crits-ChristophDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720-1710, United States.
Basem Al-ShayebDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720-1710, United States.
Mira ChaplinDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1710, United States.
Anna C MaurerDepartment of Molecular and Cell Biology, University of California, Berkeley, California 94720-1710, United States.
Robert TjianDepartment of Molecular and Cell Biology, University of California, Berkeley, California 94720-1710, United States.
Kara L NelsonDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1710, United States.ORCID 0000-0001-8899-2662
University of California, Berkeley · USInnovative Genomics Institute · USHoward Hughes Medical Institute · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
Genetic Dissection of Cells and Organisms Training ProgramT32GM132022 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Nicole King, NOAH K WHITEMAN · 2019 to 2026
$5.2M
Howard Hughes Medical Institute CC34430NIGMS NIH HHS T32 GM007232NIGMS NIH HHS T32 GM132022
6 · The paper itself

Abstract

Wastewater-based epidemiology is an emerging tool to monitor COVID-19 infection levels by measuring the concentration of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA in wastewater. There remains a need to improve wastewater RNA extraction methods' sensitivity, speed, and reduce reliance on often expensive commercial reagents to make wastewater-based epidemiology more accessible. We present a kit-free wastewater RNA extraction method, titled "Sewage, Salt, Silica and SARS-CoV-2" (4S), that employs the abundant and affordable reagents sodium chloride (NaCl), ethanol, and silica RNA capture matrices to recover sixfold more SARS-CoV-2 RNA from wastewater than an existing ultrafiltration-based method. The 4S method concurrently recovered pepper mild mottle virus (PMMoV) and human 18S ribosomal subunit rRNA, which have been proposed as fecal concentration controls. The SARS-CoV-2 RNA concentrations measured in three sewersheds corresponded to the relative prevalence of COVID-19 infection determined via clinical testing. Lastly, controlled experiments indicate that the 4S method prevented RNA degradation during storage of wastewater samples, was compatible with heat pasteurization, and in our experience, 20 samples can be processed by one lab technician in approximately 2 h. Overall, the 4S method is promising for effective, economical, and accessible wastewater-based epidemiology for SARS-CoV-2, providing another tool to fight the global pandemic.

Indexed as

COVID-19SARS-CoV-2HumansRNA, ViralSewageSilicon DioxideSodium ChlorideWastewaterRNA, ViralSewageSilicon DioxideSodium ChlorideWastewater

Identifiers

PMID33759506
PMCPMC8009096
OpenAlexW3136430370

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.