Evidence map›Paper›PMID 33758985›Full record

ArticleApplied microbiology and biotechnology2021

Discovery and genetic identification of amphiphilic coprogen siderophores from Trichoderm hypoxylon.

Jinyu Zhang, Landa Qi, Guocan Chen, Wen-Bing Yin

Abstract read
PubMed Publisher
In one paragraph

Article in Applied microbiology and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Iron acquisition strategies of the rock-inhabiting fungusApplied and environmental microbiology · 2026
    Article
  2. Article
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  4. Genetic Engineering ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jinyu ZhangState Key Laboratory of Mycology and CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, People's Republic of China.
Landa QiHenan Academy of Science Institute of Biology, Zhengzhou, 450008, People's Republic of China.
Guocan ChenHenan Academy of Science Institute of Biology, Zhengzhou, 450008, People's Republic of China.
Wen-Bing YinState Key Laboratory of Mycology and CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, People's Republic of China. yinwb@im.ac.cn.ORCID http://orcid.org/0000-0002-9184-3198
Chinese Academy of Sciences · CNHenan Academy of Sciences · CN

Funding

Construction of the Registry and Database of Bioparts for Synthetic Biology, CAS ZSYS-016National Key Research and Development Program of China 2018YFA0901901Program of Provincial Distinguished Researcher, HNAS 200505006
6 · The paper itself

Abstract

Siderophores are small molecular iron chelators and participate in the multiple cellular processes in fungi. In this study, we discovered and identified five amphiphilic coprogen siderophores including three new natural products according to LC-MS-guided separation strategy from Trichoderm hypoxylon. The structures of three new coprogens were elucidated by NMR spectroscopy, and high-resolution (HR)-ESI-MS analysis. Genetic deletions of dfcA and dfcB abolished the production of compounds 1-5 that implied their involvement in the biosynthesis of coprogens. Interestingly, cultivations of ΔdfcA and ΔdfcB mutants with pathogenic fungi Fusarium oxysporum and Mucor corcinelloides showed the weaker inhibitions in comparison to wild type that demonstrated coprogen's role in combating the pathogenic fungi. Our study not only enriched the diversities of siderophores but also provided an approach for finding the rare amphiphilic coprogen siderophores in fungi. Furthermore, this work provided a basis for investigation on the biosynthesis of fungal amphiphilic siderophores and their ecological roles in nature. KEY POINTS: • A series of amphiphilic coprogens were found. • The gene cluster of amphiphilic coprogens and ecological roles were elucidated.

Indexed as

FusariumSiderophoresHydroxamic AcidscoprogenHydroxamic AcidsSiderophoresBiosynthesisCoprogenEcological roleFungiSiderophores

Identifiers

PMID33758985
OpenAlexW3138695185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.