Evidence map›Paper›PMID 33758365›Full record

ArticleCommunications biology2021

CRISPR activation screen in mice identifies novel membrane proteins enhancing pulmonary metastatic colonisation.

Louise van der Weyden, Victoria Harle, Gemma Turner, Victoria Offord, Vivek Iyer, Alastair Droop, Agnieszka Swiatkowska, Roy Rabbie, Andrew D Campbell, Owen J Sansom and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. CRISPR Guide RNA Library Screens in Human Induced Pluripotent Stem Cells.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Common computational tools for analyzing CRISPR screens.Emerging topics in life sciences · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Louise van der WeydenWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID 0000-0002-0645-1879
Victoria Harle *Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Gemma Turner *Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Victoria OffordWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Vivek IyerWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Alastair DroopWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID 0000-0001-7695-7480
Agnieszka SwiatkowskaWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Roy RabbieWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID 0000-0002-9195-5659
Andrew D CampbellCancer Research UK Beatson Institute, Glasgow, UK.ORCID 0000-0003-3930-1276
Owen J SansomCancer Research UK Beatson Institute, Glasgow, UK.ORCID 0000-0001-9540-3010
Mercedes PardoInstitute of Cancer Research, London, UK.ORCID 0000-0002-3477-9695
Jyoti S ChoudharyInstitute of Cancer Research, London, UK.ORCID 0000-0003-0881-5477
Ingrid FerreiraWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID 0000-0002-4321-5250
Mark TullettWestern Sussex NHS Foundation Trust, Chichester, West Sussex, UK.
Mark J ArendsUniversity of Edinburgh Division of Pathology, Edinburgh Cancer Research UK Cancer Centre, Institute of Genetics & Molecular Medicine, Edinburgh, UK.ORCID 0000-0002-6826-8770
Anneliese O SpeakWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID 0000-0003-4890-4685
David J AdamsWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. da1@sanger.ac.uk.ORCID 0000-0001-9490-0306
Wellcome Sanger Institute · GBCancer Research UK Scotland Institute · GBInstitute of Cancer Research · GBEdinburgh Cancer Research · GBSussex Partnership NHS Foundation Trust · GB

Funding

Cancer Research UK 21139Cancer Research UK C20510/A13031Medical Research Council MR/S00386X/2Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

Melanoma represents ~5% of all cutaneous malignancies, yet accounts for the majority of skin cancer deaths due to its propensity to metastasise. To develop new therapies, novel target molecules must to be identified and the accessibility of cell surface proteins makes them attractive targets. Using CRISPR activation technology, we screened a library of guide RNAs targeting membrane protein-encoding genes to identify cell surface molecules whose upregulation enhances the metastatic pulmonary colonisation capabilities of tumour cells in vivo. We show that upregulated expression of the cell surface protein LRRN4CL led to increased pulmonary metastases in mice. Critically, LRRN4CL expression was elevated in melanoma patient samples, with high expression levels correlating with decreased survival. Collectively, our findings uncover an unappreciated role for LRRN4CL in the outcome of melanoma patients and identifies a potential therapeutic target and biomarker.

Indexed as

CRISPR-Cas SystemsAnimalsBiomarkers, TumorCell Line, TumorCell MovementFemaleGene Expression Regulation, NeoplasticHumansLung NeoplasmsMaleMelanoma, ExperimentalMembrane ProteinsMiceMice, Inbred C57BLMice, Inbred NODMice, KnockoutBiomarkers, TumorMembrane Proteins

Identifiers

PMID33758365
PMCPMC7987976
OpenAlexW3139052283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.