Evidence map›Paper›PMID 33758299›Full record

ArticleCommunications biology2021

Identification of a missense variant in SPDL1 associated with idiopathic pulmonary fibrosis.

Ryan S Dhindsa, Johan Mattsson, Abhishek Nag, Quanli Wang, Louise V Wain, Richard Allen, Eleanor M Wigmore, Kristina Ibanez, Dimitrios Vitsios, Sri V V Deevi and 17 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 3 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 3 syntheses or guidelines pooled it, 61 citations in OpenAlex.

  1. Pooled it
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  15. Genetics of chronic respiratory disease.Nature reviews. Genetics · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 6 countries.

Ryan S DhindsaCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.ORCID 0000-0002-8965-0813
Johan MattssonTranslational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Abhishek NagCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Quanli WangCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Louise V WainGenetic Epidemiology Group, Department of Health Sciences George Davies Centre, University of Leicester, Leicester, UK.ORCID 0000-0003-4951-1867
Richard AllenGenetic Epidemiology Group, Department of Health Sciences George Davies Centre, University of Leicester, Leicester, UK.ORCID 0000-0002-8450-3056
Eleanor M WigmoreCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Kristina IbanezCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Dimitrios VitsiosCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Sri V V DeeviCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.ORCID 0000-0002-0405-4335
Sebastian WasilewskiCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Maria KarlssonLung Regeneration, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Glenda LassiTranslational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Henric OlssonTranslational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Daniel MuthasTranslational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Susan MonkleyTranslational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Alex MackayTranslational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Lynne MurrayLung Regeneration, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Simon YoungPrecision Medicine and Biosamples, Oncology R&D, AstraZeneca, Cambridge, UK.
Carolina HaefligerCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.ORCID 0000-0002-5095-5716
FinnGen Consortium
Toby M MaherRoyal Brompton Hospital, London, UK.ORCID 0000-0001-7192-9149
Maria G BelvisiNational Heart and Lung Institute, Imperial College, London, UK.ORCID 0000-0003-1652-4370
Gisli JenkinsRespiratory Research Unit, Division of Respiratory Medicine, University of Nottingham, Nottingham, UK.ORCID 0000-0002-7929-2119
Philip L Molyneaux *Royal Brompton Hospital, London, UK. p.molyneaux@imperial.ac.uk.ORCID 0000-0003-1301-8800
Adam Platt *Translational Science & Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK. Adam.Platt@astrazeneca.com.ORCID 0000-0002-3455-1789
Slavé Petrovski *Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK. slav.petrovski@astrazeneca.com.
AstraZeneca (United Kingdom) · GBAstraZeneca (Sweden) · SEUniversity of Leicester · GBNottingham University Hospitals NHS Trust · GBRoyal Brompton Hospital · GBUniversity of Southern California · US

Funding

Department of HealthHSRD VA CDA 13-017Medical Research Council MC_PC_17228Medical Research Council MC_QA137853
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a fatal disorder characterised by progressive, destructive lung scarring. Despite substantial progress, the genetic determinants of this disease remain incompletely defined. Using whole genome and whole exome sequencing data from 752 individuals with sporadic IPF and 119,055 UK Biobank controls, we performed a variant-level exome-wide association study (ExWAS) and gene-level collapsing analyses. Our variant-level analysis revealed a novel association between a rare missense variant in SPDL1 and IPF (NM_017785.5:g.169588475 G > A p.Arg20Gln; p = 2.4 × 10

Indexed as

Mutation, MissenseAgedCase-Control StudiesCell Cycle ProteinsExome SequencingFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansIdiopathic Pulmonary FibrosisMalePhenotypeCell Cycle ProteinsSPDL1 protein, human

Identifiers

PMID33758299
PMCPMC7988141
OpenAlexW3136119308

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.