Evidence map›Paper›PMID 33754959›Full record

ArticleEmerging microbes & infections2021

Antigenic and molecular characterization of low pathogenic avian influenza A(H9N2) viruses in sub-Saharan Africa from 2017 through 2019.

Maxime Fusade-Boyer, Fidélia Djegui, Komla Batawui, Denis K Byuragaba, Jeremy C Jones, Fred Wabwire-Mangeni, Bernard Erima, Gladys Atim, Qouilazoni A Ukuli, Titus Tugume and 11 more

Abstract read
In one paragraph

Article in Emerging microbes & infections, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  5. Avian influenza overview June-September 2024.EFSA journal. European Food Safety Authority · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Maxime Fusade-BoyerIHAP, UMR1225, Université de Toulouse, INRAe, ENVT, Toulouse, France.
Fidélia DjeguiLADISERO, Parakou, Benin.
Komla BatawuiLaboratoire Central Vétérinaire de Lomé, Lomé, Togo.
Denis K ByuragabaMakerere University, Kampala, Uganda.
Jeremy C JonesDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Fred Wabwire-MangeniMakerere University, Kampala, Uganda.
Bernard ErimaMakerere University Walter Reed Project, Kampala, Uganda.
Gladys AtimMakerere University Walter Reed Project, Kampala, Uganda.
Qouilazoni A UkuliMakerere University Walter Reed Project, Kampala, Uganda.
Titus TugumeMakerere University Walter Reed Project, Kampala, Uganda.
Koffi DognoLaboratoire Central Vétérinaire de Lomé, Lomé, Togo.
Komlan AdjabliLaboratoire Central Vétérinaire de Lomé, Lomé, Togo.
Mvibudulu NzuziIHAP, UMR1225, Université de Toulouse, INRAe, ENVT, Toulouse, France.
Rachidatou AdjinLADISERO, Parakou, Benin.
Trushar JeevanDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Adam RubrumDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Wolali Go-MaroLaboratoire Central Vétérinaire de Lomé, Lomé, Togo.
Ghazi KayaliHuman Link, Hazmieh, Lebanon.ORCID https://orcid.org/0000-0002-5387-1622
Pamela McKenzieDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Richard J WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID https://orcid.org/0000-0002-4397-7132
Mariette F DucatezIHAP, UMR1225, Université de Toulouse, INRAe, ENVT, Toulouse, France.ORCID https://orcid.org/0000-0001-9632-5499

Funding

NIAID NIH HHS HHSN266200700005CNIAID NIH HHS HHSN272201400006C
6 · The paper itself

Abstract

Sub-Saharan Africa was historically considered an animal influenza cold spot, with only sporadic highly pathogenic H5 outbreaks detected over the last 20 years. However, in 2017, low pathogenic avian influenza A(H9N2) viruses were detected in poultry in Sub-Saharan Africa. Molecular, phylogenetic, and antigenic characterization of isolates from Benin, Togo, and Uganda showed that they belonged to the G1 lineage. Isolates from Benin and Togo clustered with viruses previously described in Western Africa, whereas viruses from Uganda were genetically distant and clustered with viruses from the Middle East. Viruses from Benin exhibited decreased cross-reactivity with those from Togo and Uganda, suggesting antigenic drift associated with reduced replication in Calu-3 cells. The viruses exhibited mammalian adaptation markers similar to those of the human strain A/Senegal/0243/2019 (H9N2). Therefore, viral genetic and antigenic surveillance in Africa is of paramount importance to detect further evolution or emergence of new zoonotic strains.

Indexed as

Africa South of the SaharaAnimalsAntibodies, ViralAntigenic VariationChickensCross ReactionsEvolution, MolecularHumansInfluenza A Virus, H9N2 SubtypeInfluenza, HumanInfluenza in BirdsPhylogenyPoultry DiseasesVirulenceVirus ReplicationAntibodies, ViralAfricaantigenic cartographyInfluenza virusone healthphylogeny

Identifiers

PMID33754959
PMCPMC8057090

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.