Evidence map›Paper›PMID 33754173›Full record

ArticleImmunogenetics2021

HLA-DRB1 genes and the expression dynamics of HLA CIITA determine the susceptibility to T2DM.

Rathika Chinniah, Vandit Sevak, Sasiharan Pandi, Padma Malini Ravi, Murali Vijayan, Arun Kannan, Balakrishnan Karuppiah

Abstract read
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Article in Immunogenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Decoding the role of macrophages in periodontitis and type 2 diabetes using single-cell RNA-sequencing.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Rathika ChinniahDepartment of Immunology, School of Biological Sciences, Madurai, Tamil Nadu, 625021, India.
Vandit SevakDepartment of Immunology, School of Biological Sciences, Madurai, Tamil Nadu, 625021, India.
Sasiharan PandiDepartment of Immunology, School of Biological Sciences, Madurai, Tamil Nadu, 625021, India.
Padma Malini RaviDepartment of Immunology, School of Biological Sciences, Madurai, Tamil Nadu, 625021, India.
Murali VijayanDepartment of Internal Medicine, Texas Tech University Health Sciences Center, Lubbock, TX, 79430, USA.
Arun KannanThe Madurai Institute of Diabetes and Endocrine Practice Research, Madurai, Tamil Nadu, 625 001, India.
Balakrishnan KaruppiahDepartment of Immunology, School of Biological Sciences, Madurai, Tamil Nadu, 625021, India. immunobala@mkuniversity.org.
Texas Tech University Health Sciences Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type 2 diabetes mellitus (T2DM) is a disease with polygenic inheritance. The expression of major histocompatibility complex class II genes are regulated by several trans-activators. We have studied the expression of HLA-DRB1, RFX, CIITA-P1, PIV transactivators, immunophenotyping of cells, SNPs in CIITA-168 (A/G) and IFN-γ + 874 (T/A) in T2DM patients and controls (n = 201 each). We observed increased frequencies of DRB1*03, DRB1*04 and DRB1*07 and decreased frequencies of DRB1*10, DRB1*14, and DRB1*15 alleles among patients. Significant up-regulations of HLA-DRB1 genes were observed in patients (p < 0.0001). Down-regulated expressions were documented in DRB1*03-homo (p < 0.002) and DRB1*04-homo (p < 0.009) patients. No significant differences were observed for CIITA-P1 expression except DRB1*04-pooled (p < 0.0113). The CIITA-PIV was up-regulated in overall (p < 0.0001), DRB1*03-pooled (p < 0.0006), DRB1*03-hetero (p < 0.0006) and DRB1*03-homo (p < 0.001) T2DM patients. However, significant down-regulations were documented for DRB1*04-pooled (p < 0.040), DRB1*04-hetero (p < 0.060), and DRB1*04-homo (p < 0.027) combinations. Further, significant down-regulations of RFX5 were observed in overall (p < 0.0006), DRB1*04-pooled (p < 0.0022), and DRB1*04-hetero (p < 0.0004) combinations. Immunophenotyping studies revealed significant increase of CD45

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultCase-Control StudiesDiabetes Mellitus, Type 2FemaleHLA-DRB1 ChainsHumansMaleMiddle AgedNuclear ProteinsTrans-ActivatorsHLA-DRB1 ChainsMHC class II transactivator proteinNuclear ProteinsTrans-ActivatorsCIITAHLAMHCPromoterRFX5T2DM

Identifiers

PMID33754173
OpenAlexW3138623128

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.