Evidence map›Paper›PMID 33753926›Full record

ArticleNature chemical biology2021

Discovery and resistance mechanism of a selective CDK12 degrader.

Baishan Jiang, Yang Gao, Jianwei Che, Wenchao Lu, Ines H Kaltheuner, Ruben Dries, Marian Kalocsay, Matthew J Berberich, Jie Jiang, Inchul You and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 133 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Induced proximity-based therapeutic modalities.Nature reviews. Drug discovery · 2026
    Review
  12. Article
  13. Review
  14. CDK12 and CDK13 in oncology: from RNA regulation to therapeutic targeting.Cellular oncology (Dordrecht, Netherlands) · 2026
    Review
  15. Review
  16. Article
  17. Review
  18. Rational Design of CDK12/13 and BRD4 Molecular Glue Degraders.Angewandte Chemie (International ed. in English) · 2025
    Article
  19. Review
  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Baishan Jiang *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0001-6796-9500
Yang Gao *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Jianwei Che *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4956-4811
Wenchao LuDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1175-365X
Ines H KaltheunerInstitute of Structural Biology, University of Bonn, Bonn, Germany.
Ruben DriesDepartment of Hematology and Oncology, Boston University, Boston, MA, USA.ORCID http://orcid.org/0000-0001-7650-7754
Marian KalocsayLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4187-5829
Matthew J BerberichLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.
Jie JiangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Inchul YouDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Nicholas KwiatkowskiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Kristin M RichingPromega Corporation, Madison, WI, USA.
Danette L DanielsPromega Corporation, Madison, WI, USA.ORCID http://orcid.org/0000-0002-7659-3020
Peter K SorgerLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-3364-1838
Matthias GeyerInstitute of Structural Biology, University of Bonn, Bonn, Germany.
Tinghu ZhangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. tinghu_zhang@dfci.harvard.edu.
Nathanael S GrayDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. nathanael_gray@dfci.harvard.edu.ORCID http://orcid.org/0000-0001-5354-7403
Harvard University · USPromega (United States) · USUniversity of Bonn · DEBoston University · US

Funding

StructureP01CA154303 · NCI · DANA-FARBER CANCER INST · PI JANNE, PASI A · 2012 to 2021
$17.8M
Illuminating Function of the Understudied Druggable KinomeU24DK116204 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JOHNSON, GARY L. · 2017 to 2022
$13.6M
Systems Pharmacology of Therapeutic and Adverse Responses to ImmuneCheckpoint and Small Molecule DrugsU54CA225088 · NCI · HARVARD MEDICAL SCHOOL · PI SORGER, PETER KARL · 2018 to 2022
$10.8M
NCI NIH HHS P01 CA154303NCI NIH HHS U54 CA225088NIDDK NIH HHS U24 DK116204
6 · The paper itself

Abstract

Cyclin-dependent kinase 12 (CDK12) is an emerging therapeutic target due to its role in regulating transcription of DNA-damage response (DDR) genes. However, development of selective small molecules targeting CDK12 has been challenging due to the high degree of homology between kinase domains of CDK12 and other transcriptional CDKs, most notably CDK13. In the present study, we report the rational design and characterization of a CDK12-specific degrader, BSJ-4-116. BSJ-4-116 selectively degraded CDK12 as assessed through quantitative proteomics. Selective degradation of CDK12 resulted in premature cleavage and poly(adenylation) of DDR genes. Moreover, BSJ-4-116 exhibited potent antiproliferative effects, alone and in combination with the poly(ADP-ribose) polymerase inhibitor olaparib, as well as when used as a single agent against cell lines resistant to covalent CDK12 inhibitors. Two point mutations in CDK12 were identified that confer resistance to BSJ-4-116, demonstrating a potential mechanism that tumor cells can use to evade bivalent degrader molecules.

Indexed as

AnimalsCyclin-Dependent KinasesDNA DamageDrug DesignDrug DiscoveryDrug ResistanceHumansPoly APoly Adenosine Diphosphate RiboseProtein Kinase InhibitorsProteomicsCDK12 protein, humanCyclin-Dependent KinasesPoly APoly Adenosine Diphosphate RiboseProtein Kinase Inhibitors

Identifiers

PMID33753926
PMCPMC8590456
OpenAlexW3136984727

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.