Evidence map›Paper›PMID 33753903›Full record

ArticleCell death and differentiation2021

PARsylated transcription factor EB (TFEB) regulates the expression of a subset of Wnt target genes by forming a complex with β-catenin-TCF/LEF1.

Soyoung Kim, Gahyeon Song, Taebok Lee, Minseong Kim, Jeongrae Kim, Hyeryun Kwon, Jiyoung Kim, Wonyoung Jeong, Ukjin Lee, Chaebin Na and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Cell death and differentiation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Gene expression regulation by CaCellular & molecular biology letters · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Soyoung KimDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Gahyeon SongDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Taebok LeeConfocal Core Facility, Center for Medical Innovation, Seoul National University Hospital, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-8390-6670
Minseong KimDKFZ-ZMBH Alliance, Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-3927-4899
Jeongrae KimDepartment of Mathematics, University of Seoul, Seoul, Republic of Korea.
Hyeryun KwonDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Jiyoung KimDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Wonyoung JeongDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Ukjin LeeDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Chaebin NaDepartment of Life Science, University of Seoul, Seoul, Republic of Korea.
Sangwon KangResearch Center for Cell Homeostasis, Ewha Womans University, Seoul, Republic of Korea.
Wantae KimDepartment of Biochemistry, Chungnam National University, Daejeon, Republic of Korea.
Je Kyung SeongLaboratory of Developmental Biology and Genomics, College of Veterinary Medicine, Seoul National University, Seoul, Republic of Korea.
Eek-Hoon JhoDepartment of Life Science, University of Seoul, Seoul, Republic of Korea. ej70@uos.ac.kr.ORCID http://orcid.org/0000-0003-2414-6234
University of Seoul · KRChungnam National University · KREwha Womans University · KRGerman Cancer Research Center · DESeoul National University · KRSeoul National University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wnt signaling is mainly transduced by β-catenin via regulation of the β-catenin destruction complex containing Axin, APC, and GSK3β. Transcription factor EB (TFEB) is a well-known master regulator of autophagy and lysosomal biogenesis processes. TFEB's nuclear localization and transcriptional activity are also regulated by various upstream signals. In this study, we found that Wnt signaling induces the nuclear localization of TFEB and the expression of Wnt target genes is regulated by TFEB-β-catenin-TCF/LEF1 as well as β-catenin-TCF/LEF1 complexes. Our biochemical data revealed that TFEB is a part of the β-catenin destruction complex, and destabilization of the destruction complex by knockdown of either Axin or APC causes nuclear localization of TFEB. Interestingly, RNA-sequencing analysis revealed that about 27% of Wnt3a-induced genes were TFEB dependent. However, these "TFEB mediated Wnt target genes" were different from TFEB target genes involved in autophagy and lysosomal biogenesis processes. Mechanistically, we found that Tankyrase (TNKS) PARsylates TFEB with Wnt ON signaling, and the nuclear localized PARsylated TFEB forms a complex with β-catenin-TCF/LEF1 to induce the "TFEB mediated Wnt target genes". Finally, we found that in various types of cancer, the levels of TFEB mediated Wnt target genes exhibit strong correlations with the level of Axin2, which represents the activity of Wnt signaling. Overall, our data suggest that Wnt signaling induces the expression of a subset of genes that are distinct from previously known genes regulated by the β-catenin-TCF/LEF1 complex or TFEB, by forming a transcription factor complex consisting of PARsylated TFEB and β-catenin-TCF/LEF1.

Indexed as

AutophagyBasic Helix-Loop-Helix Leucine Zipper Transcription Factorsbeta CateninCell Line, TumorCell ProliferationHeLa CellsHumansLymphoid Enhancer-Binding Factor 1OncogenesTransfectionWnt Signaling PathwayBasic Helix-Loop-Helix Leucine Zipper Transcription Factorsbeta CateninLEF1 protein, humanLymphoid Enhancer-Binding Factor 1TFEB protein, human

Identifiers

PMID33753903
PMCPMC8408140
OpenAlexW3137652007

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.