Evidence map›Paper›PMID 33753478›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai-Tibet Plateau.

Yanhua Qu, Chunhai Chen, Xiumin Chen, Yan Hao, Huishang She, Mengxia Wang, Per G P Ericson, Haiyan Lin, Tianlong Cai, Gang Song and 13 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Review
  9. Extreme elevational migration spurred cryptic speciation in giant hummingbirds.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  14. The highest-elevation frog provides insights into mechanisms and evolution of defenses against high UV radiation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 3 countries.

Yanhua QuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China; quyh@ioz.ac.cn zhangchi2@bgi.com zhangyong@ioz.ac.cn leifm@ioz.ac.cn.ORCID 0000-0002-4590-7787
Chunhai ChenBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.ORCID 0000-0003-0484-6233
Xiumin ChenKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.
Yan HaoKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.ORCID 0000-0002-1415-7610
Huishang SheKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.ORCID 0000-0001-6259-7904
Mengxia WangKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.
Per G P EricsonDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, SE-104 05 Stockholm, Sweden.ORCID 0000-0002-4143-9998
Haiyan LinKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.ORCID 0000-0002-1623-9361
Tianlong CaiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.
Gang SongKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.ORCID 0000-0002-0190-8315
Chenxi JiaKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.
Chunyan ChenKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.ORCID 0000-0002-2882-4517
Hailin ZhangBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.
Jiang LiBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.ORCID 0000-0003-2099-8165
Liping LiangBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.
Tianyu WuBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.
Jinyang ZhaoBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.ORCID 0000-0002-8150-044X
Qiang GaoBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China.ORCID 0000-0001-9880-4944
Guojie ZhangBGI-Shenzhen, 518083 Shenzhen, China.ORCID 0000-0001-6860-1521
Weiwei ZhaiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.ORCID 0000-0001-7938-0226
Chi ZhangBGI Genomics, BGI-Shenzhen, 518084 Shenzhen, China; quyh@ioz.ac.cn zhangchi2@bgi.com zhangyong@ioz.ac.cn leifm@ioz.ac.cn.
Yong E ZhangKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China; quyh@ioz.ac.cn zhangchi2@bgi.com zhangyong@ioz.ac.cn leifm@ioz.ac.cn.ORCID 0000-0003-3770-2383
Fumin LeiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China; quyh@ioz.ac.cn zhangchi2@bgi.com zhangyong@ioz.ac.cn leifm@ioz.ac.cn.ORCID 0000-0001-9920-8167
Chinese Academy of Sciences · CNBGI Group (China) · CNSwedish Museum of Natural History · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Species in a shared environment tend to evolve similar adaptations under the influence of their phylogenetic context. Using snowfinches, a monophyletic group of passerine birds (Passeridae), we study the relative roles of ancestral and species-specific adaptations to an extreme high-elevation environment, the Qinghai-Tibet Plateau. Our ancestral trait reconstruction shows that the ancestral snowfinch occupied high elevations and had a larger body mass than most nonsnowfinches in Passeridae. Subsequently, this phenotypic adaptation diversified in the descendant species. By comparing high-quality genomes from representatives of the three phylogenetic lineages, we find that about 95% of genes under positive selection in the descendant species are different from those in the ancestor. Consistently, the biological functions enriched for these species differ from those of their ancestor to various degrees (semantic similarity values ranging from 0.27 to 0.5), suggesting that the three descendant species have evolved divergently from the initial adaptation in their common ancestor. Using a functional assay to a highly selective gene,

Indexed as

Mutation RateSelection, GeneticAcclimatizationAltitudeAmino Acid SubstitutionAnimalsBody SizeDNA RepairNuclear ProteinsPhylogenySpecies SpecificityTibetNuclear Proteinscommon ancestrycomparative genomicsDTLhigh-elevation adaptationssnowfinches

Identifiers

PMID33753478
PMCPMC8020664
OpenAlexW3139039422

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.