ArticleScientific reports2021
Detection of breeding signatures in wheat using a linkage disequilibrium-corrected mapping approach.
Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Harnessing artificial intelligence in plant breeding: innovations in digital phenotyping and breeding methodologies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genomic signatures of selection highlight the erosion of resilience alleles in Iranian wheat.BMC plant biology · 2026Article
- Whole genome analysis of selection associated with resistance to heat stress in chickens.Scientific reports · 2026Article
- UAV-based multispectral image analysis revealed stay-green haplotypes in wheat specific for different soil nitrogen levels.BMC plant biology · 2025Article
- Genome-Wide Association Analyses Identify Hydrogen Peroxide-Responsive Loci in Wheat Diversity.Plant direct · 2025Article
- A comprehensive catalog of single nucleotide polymorphisms (SNPs) from the black pepper (Piper nigrum L.) genome.BMC genomics · 2025Article
- Unraveling the genetic basis of heat tolerance and yield in bread wheat: QTN discovery and Its KASP-assisted validation.BMC plant biology · 2025Article
- GWAS and WGCNA analysis uncover candidate genes associated with drought inFrontiers in plant science · 2025Article
- Effect of Chromosomal Localization of NGS-Based Markers on Their Applicability for Analyzing Genetic Variation and Population Structure of Hexaploid Triticale.International journal of molecular sciences · 2024Article
- Novel PHOTOPERIOD-1 gene variants associate with yield-related and root-angle traits in European bread wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genome-wide association mapping for pre-harvest sprouting in European winter wheat detects novel resistance QTL, pleiotropic effects, and structural variation in multiple genomes.The plant genome · 2024Article
- Genome-wide dissection and haplotype analysis identified candidate loci for nitrogen use efficiency under drought conditions in winter wheat.The plant genome · 2024Article
- Local and Bayesian Survival FDR Estimations to Identify Reliable Associations in Whole Genome of Bread Wheat.International journal of molecular sciences · 2023Article
- Genetic dissection of root architectural plasticity and identification of candidate loci in response to drought stress in bread wheat.BMC genomic data · 2023Article
- Identification of genomic regions associated with cereal cyst nematode (Heterodera avenae Woll.) resistance in spring and winter wheat.Scientific reports · 2023Article
- Article
- Pinpointing genomic loci for drought-induced proline and hydrogen peroxide accumulation in bread wheat under field conditions.BMC plant biology · 2022Article
- Chromosome 3A harbors several pleiotropic and stable drought-responsive alleles for photosynthetic efficiency selected through wheat breeding.Plant direct · 2022Article
- Identification of QTLs for wheat heading time across multiple-environments.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Genetic dissection of grain iron and zinc, and thousand kernel weight in wheat (Triticum aestivum L.) using genome-wide association study.Scientific reports · 2022Article
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Authors and funding
5 authors.
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Abstract
Marker assisted breeding, facilitated by reference genome assemblies, can help to produce cultivars adapted to changing environmental conditions. However, anomalous linkage disequilibrium (LD), where single markers show high LD with markers on other chromosomes but low LD with adjacent markers, is a serious impediment for genetic studies. We used a LD-correction approach to overcome these drawbacks, correcting the physical position of markers derived from 15 and 135 K arrays in a diversity panel of bread wheat representing 50 years of breeding history. We detected putative mismapping of 11.7% markers and improved the physical alignment of 5.4% markers. Population analysis indicated reduced genetic diversity over time as a result of breeding efforts. By analysis of outlier loci and allele frequency change over time we traced back the 2NS/2AS translocation of Aegilops ventricosa to one cultivar, "Cardos" (registered in 1998) which was the first among the panel to contain this translocation. A "selective sweep" for this important translocation region on chromosome 2AS was found, putatively linked to plant response to biotic stress factors. Our approach helps in overcoming the drawbacks of incorrectly anchored markers on the wheat reference assembly and facilitates detection of selective sweeps for important agronomic traits.
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