Evidence map›Paper›PMID 33750777›Full record

ArticleNature communications2021

Disrupting upstream translation in mRNAs is associated with human disease.

David S M Lee, Joseph Park, Andrew Kromer, Aris Baras, Daniel J Rader, Marylyn D Ritchie, Louis R Ghanem, Yoseph Barash

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 68 citations in OpenAlex.

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  8. RNA-Based Therapies for Inherited Metabolic Disorders.Journal of inherited metabolic disease · 2026
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  18. Tiny but mighty: Diverse functions of uORFs that regulate gene expression.Computational and structural biotechnology journal · 2024
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

David S M LeeDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-8821-9028
Joseph ParkDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-3313-641X
Andrew KromerDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Aris BarasRegeneron Genetics Center, Regeneron Pharmaceuticals, Tarrytown, NY, USA.ORCID 0000-0002-6830-3396
Daniel J RaderDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-9245-9876
Marylyn D RitchieDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-1208-1720
Louis R GhanemDivision of Gastroenterology, Hepatology and Nutrition, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. lghanem@its.jnj.com.
Yoseph BarashDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. yosephb@upenn.edu.ORCID 0000-0003-3005-5048
University of Pennsylvania · USTranslational Therapeutics (United States) · USChildren's Hospital of Philadelphia · USRegeneron (United States) · US

Funding

Training Program in Computational GenomicsT32HG000046 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JUNHYONG KIM, Mingyao Li · 1999 to 2026
$9.5M
Methods for RNA splicing variations detection, quantification, visualization, and association from large heterogeneous datasetsR01GM128096 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARASH, YOSEPH · 2018 to 2021
$1.8M
NHGRI NIH HHS T32 HG000046NIGMS NIH HHS R01 GM128096
6 · The paper itself

Abstract

Ribosome-profiling has uncovered pervasive translation in non-canonical open reading frames, however the biological significance of this phenomenon remains unclear. Using genetic variation from 71,702 human genomes, we assess patterns of selection in translated upstream open reading frames (uORFs) in 5'UTRs. We show that uORF variants introducing new stop codons, or strengthening existing stop codons, are under strong negative selection comparable to protein-coding missense variants. Using these variants, we map and validate gene-disease associations in two independent biobanks containing exome sequencing from 10,900 and 32,268 individuals, respectively, and elucidate their impact on protein expression in human cells. Our results suggest translation disrupting mechanisms relating uORF variation to reduced protein expression, and demonstrate that translation at uORFs is genetically constrained in 50% of human genes.

Indexed as

Open Reading Frames5' Untranslated RegionsDiseaseGene Expression RegulationGene Regulatory NetworksGenetic Association StudiesGenome, HumanHumansPhenotypePhosphotransferases (Phosphate Group Acceptor)Protein BiosynthesisProtein Processing, Post-TranslationalProteinsReceptor, EphB2RNA, Messenger5' Untranslated RegionsEPHB2 protein, humanphosphomevalonate kinasePhosphotransferases (Phosphate Group Acceptor)ProteinsReceptor, EphB2RNA, Messenger

Identifiers

PMID33750777
PMCPMC7943595
OpenAlexW3135537831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.