Evidence map›Paper›PMID 33750764›Full record

ArticleHorticulture research2021

Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response.

Begoña Orozco-Navarrete, Jina Song, Ana Casañal, Rosangela Sozzani, Victor Flors, José F Sánchez-Sevilla, Johanna Trinkl, Thomas Hoffmann, Catharina Merchante, Wilfried Schwab and 1 more

Open access · goldAbstract read
In one paragraph

Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Begoña Orozco-NavarreteLaboratorio de Bioquímica y Biotecnología Vegetal, Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM), Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, UMA, Málaga, Spain.
Jina SongDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA.
Ana CasañalLaboratorio de Bioquímica y Biotecnología Vegetal, Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM), Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, UMA, Málaga, Spain.
Rosangela SozzaniDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA.
Victor FlorsMetabolic Integration and Cell Signalling Group, Plant Physiology Section, Department of Ciencias Agrarias y del Medio Natural, Universitat Jaume I, Castelló, Spain.
José F Sánchez-SevillaDepartamento de Genómica y Biotecnología, IFAPA, Málaga, Spain.ORCID http://orcid.org/0000-0002-6690-7196
Johanna TrinklBiotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany.
Thomas HoffmannBiotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany.
Catharina MerchanteLaboratorio de Bioquímica y Biotecnología Vegetal, Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM), Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, UMA, Málaga, Spain.
Wilfried SchwabBiotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany.
Victoriano ValpuestaLaboratorio de Bioquímica y Biotecnología Vegetal, Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM), Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, UMA, Málaga, Spain. valpuesta@uma.es.
Consejo Superior de Investigaciones Científicas · ESTechnical University of Munich · DENorth Carolina State University · USAndalusian Institute of Agricultural and Fisheries Research and Training · ESUniversitat Jaume I · ES

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) Grant Agreement No 679303Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) BES-2014-068723Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) BIO2013-44199-R
6 · The paper itself

Abstract

The strawberry Fra a 1 proteins belong to the class 10 Pathogenesis-Related (PR-10) superfamily. In strawberry, a large number of members have been identified, but only a limited number is expressed in the fruits. In this organ, Fra a 1.01 and Fra a 1.02 are the most abundant Fra proteins in the green and red fruits, respectively, however, their function remains unknown. To know the function of Fra a 1.02 we have generated transgenic lines that silence this gene, and performed metabolomics, RNA-Seq, and hormonal assays. Previous studies associated Fra a 1.02 to strawberry fruit color, but the analysis of anthocyanins in the ripe fruits showed no diminution in their content in the silenced lines. Gene ontology (GO) analysis of the genes differentially expressed indicated that oxidation/reduction was the most represented biological process. Redox state was not apparently altered since no changes were found in ascorbic acid and glutathione (GSH) reduced/oxidized ratio, but GSH content was reduced in the silenced fruits. In addition, a number of glutathione-S-transferases (GST) were down-regulated as result of Fra a 1.02-silencing. Another highly represented GO category was transport which included a number of ABC and MATE transporters. Among the regulatory genes differentially expressed WRKY33.1 and WRKY33.2 were down-regulated, which had previously been assigned a role in strawberry plant defense. A reduced expression of the VQ23 gene and a diminished content of the hormones JA, SA, and IAA were also found. These data might indicate that Fra a 1.02 participates in the defense against pathogens in the ripe strawberry fruits.

Identifiers

PMID33750764
PMCPMC7943815
OpenAlexW3135578368

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.