Evidence map›Paper›PMID 33750333›Full record

ArticleBMC infectious diseases2021

Development of a recombinase-aided amplification assay for rapid detection of human norovirus GII.4.

Zhiwei Qin, Liang Xue, Weicheng Cai, Junshan Gao, Yueting Jiang, Jiale Yang, Yanhui Liang, Linping Wang, Jumei Zhang, Yongdan Hu and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. A Rapid Detection Method for H3 Avian Influenza Viruses Based on RT-RAA.Animals : an open access journal from MDPI · 2024
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Rapid detection of mpox virus using recombinase aided amplification assay.Frontiers in cellular and infection microbiology · 2023
    Article
  7. Article
  8. Quick detection ofFrontiers in cellular and infection microbiology · 2022
    Article
  9. Rapid detection ofFrontiers in cellular and infection microbiology · 2022
    Article
  10. Article
  11. A Recombinase Aided Amplification Assay for Rapid Detection of theFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Zhiwei QinGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Liang XueGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China. xueliang@gdim.cn.ORCID http://orcid.org/0000-0002-2106-4690
Weicheng CaiGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Junshan GaoGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Yueting JiangDepartment of Laboratory Medicine, First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, 510120, People's Republic of China.
Jiale YangGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Yanhui LiangGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Linping WangGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Jumei ZhangGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China.
Yongdan HuFaculty Agriculture and Food, Kunming University of Science and Technology, Kunming, 650500, Yunnan, China. kunlan881221@126.com.
Qingping WuGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, No. 100, Xianlie Zhong Road, Guangzhou, Guangdong, 510070, People's Republic of China. wuqp203@163.com.
Guangdong Academy of Sciences · CNKunming University of Science and Technology · CNFirst Affiliated Hospital of Guangzhou Medical University · CN

Funding

GDAS'Project of Science and Technology Development 2020GDASYL-20200104008the Key Research and Development Program of Guangdong Province 2019B020209001the National Key Research and Development Program of China 2018YFC1602500the National Natural Science Foundation of China 31872912the Natural Science Foundations of Guangdong Province for Distinguished Young Scholars 2019B151502065
6 · The paper itself

Abstract

backgroundHuman noroviruses are one of the main causes of foodborne illnesses and represent a serious public health concern. Rapid and sensitive assays for human norovirus detection are undoubtedly necessary for clinical diagnosis, especially in regions without more sophisticated equipment.

methodThe rapid reverse transcription recombinase-aided amplification (RT-RAA) is a fast, robust and isothermal nucleic acid detection method based on enzyme reaction. This method can complete the sample detection at 39 °C in 30 min. In this study, we successfully established a rapid reverse transcription recombinase-aided amplification (RT-RAA) assay for the detection of human norovirus GII.4 and applied this assay to clinical samples, as well as comparison with commercial reverse transcription real-time fluorescence quantitative PCR (RT-qPCR).

resultsAt 95% probability, the detection sensitivity of RT-RAA was 3.425 log10 genomic copies (LGC)/reaction. Moreover, no cross-reaction was observed with other norovirus genogroups and other common foodborne viruses. Stool samples were examined by RT-RAA and reverse transcription quantitative real-time polymerase chain reaction (RT-qPCR). Compared of RT-qPCR, kappa values for human norovirus detection with RT-RAA were 0.894 (p < 0.001), indicating that both assays were in agreement.

conclusionThis RT-RAA assay provides a rapid, specific, and sensitive assay for human norovirus detection and is suitable for clinical testing.

Indexed as

Base SequenceCaliciviridae InfectionsDNA PrimersGastroenteritisGenotypeHumansNorovirusNucleic Acid Amplification TechniquesRecombinasesRNA, ViralSensitivity and SpecificitySequence AlignmentDNA PrimersRecombinasesRNA, ViralDetectionNorovirusRapid diagnostic techniqueRecombinase-aided amplification

Identifiers

PMID33750333
PMCPMC7941963
OpenAlexW3114682394

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.