ArticleVirus evolution2021
Genomic epidemiology of a densely sampled COVID-19 outbreak in China.
Article in Virus evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Integrating Contact Tracing Data to Enhance Outbreak Phylodynamic Inference: A Deep Learning Approach.Molecular biology and evolution · 2024Article
- Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Clinical characteristics of COVID-19 patients treated in emergency COVID-19 hospitals in Vietnam: Experience from Phutho province, Vietnam.International journal of medical sciences · 2024Article
- Article
- SUP: a probabilistic framework to propagate genome sequence uncertainty, with applications.NAR genomics and bioinformatics · 2023Article
- Epidemiological inference for emerging viruses using segregating sites.Nature communications · 2023Article
- The potential of genomics for infectious disease forecasting.Nature microbiology · 2022Review
- Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic.Nature reviews. Genetics · 2022Review
- Review
- Statistical Challenges in Tracking the Evolution of SARS-CoV-2.Statistical science : a review journal of the Institute of Mathematical Statistics · 2022Article
- Forecast of the outbreak of COVID-19 using artificial neural network: Case study Qatar, Spain, and Italy.Results in physics · 2021Article
- SARS-CoV-2 transmission dynamics in Belarus revealed by genomic and incidence data analysis.medRxiv : the preprint server for health sciences · 2021Article
- Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions.Nature communications · 2021Article
- SARS-CoV-2 transmission dynamics in Belarus in 2020 revealed by genomic and incidence data analysis.Communications medicine · 2021Article
- Genomic Epidemiology Reveals Multiple Introductions of Severe Acute Respiratory Syndrome Coronavirus 2 in Niigata City, Japan, Between February and May 2020.Frontiers in microbiology · 2021Article
- Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador.Virus evolution · 2021Article
- Genomic Epidemiology of SARS-CoV-2 From Mainland China With Newly Obtained Genomes From Henan Province.Frontiers in microbiology · 2021Article
Corrections and comments
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Authors and funding
22 authors.
Funding
Abstract
Analysis of genetic sequence data from the SARS-CoV-2 pandemic can provide insights into epidemic origins, worldwide dispersal, and epidemiological history. With few exceptions, genomic epidemiological analysis has focused on geographically distributed data sets with few isolates in any given location. Here, we report an analysis of 20 whole SARS- CoV-2 genomes from a single relatively small and geographically constrained outbreak in Weifang, People's Republic of China. Using Bayesian model-based phylodynamic methods, we estimate a mean basic reproduction number (
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