Evidence map›Paper›PMID 33746203›Full record

ArticleThe ISME journal2021

Mutability of demographic noise in microbial range expansions.

QinQin Yu, Matti Gralka, Marie-Cécilia Duvernoy, Megan Sousa, Arbel Harpak, Oskar Hallatschek

Abstract read
In one paragraph

Article in The ISME journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. The evolution of genetic drift over 50,000 generations.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Range expansions across landscapes with quenched noise.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Review
  5. Exploring the expanse between theoretical questions and experimental approaches in the modern study of evolvability.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

QinQin YuDepartment of Physics, UC Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-0838-3670
Matti GralkaDepartment of Physics, UC Berkeley, Berkeley, CA, USA.
Marie-Cécilia DuvernoyDepartment of Physics, UC Berkeley, Berkeley, CA, USA.
Megan SousaDepartment of Physics, UC Berkeley, Berkeley, CA, USA.
Arbel HarpakDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA.
Oskar HallatschekDepartment of Physics, UC Berkeley, Berkeley, CA, USA. ohallats@berkeley.edu.ORCID http://orcid.org/0000-0002-1312-5975

Funding

Resolving the Mechano-Chemical Regulation of Microbial Populations in Microfluidic DevicesR01GM115851 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HALLATSCHEK, OSKAR · 2015 to 2023
$2.2M
NIGMS NIH HHS R01 GM115851
6 · The paper itself

Abstract

Demographic noise, the change in the composition of a population due to random birth and death events, is an important driving force in evolution because it reduces the efficacy of natural selection. Demographic noise is typically thought to be set by the population size and the environment, but recent experiments with microbial range expansions have revealed substantial strain-level differences in demographic noise under the same growth conditions. Many genetic and phenotypic differences exist between strains; to what extent do single mutations change the strength of demographic noise? To investigate this question, we developed a high-throughput method for measuring demographic noise in colonies without the need for genetic manipulation. By applying this method to 191 randomly-selected single gene deletion strains from the E. coli Keio collection, we find that a typical single gene deletion mutation decreases demographic noise by 8% (maximal decrease: 81%). We find that the strength of demographic noise is an emergent trait at the population level that can be predicted by colony-level traits but not cell-level traits. The observed differences in demographic noise from single gene deletions can increase the establishment probability of beneficial mutations by almost an order of magnitude (compared to in the wild type). Our results show that single mutations can substantially alter adaptation through their effects on demographic noise and suggest that demographic noise can be an evolvable trait of a population.

Indexed as

Escherichia coliSelection, GeneticMutationPhenotypePopulation Density

Identifiers

PMID33746203
PMCPMC8397776

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.