Evidence map›Paper›PMID 33744956›Full record

ArticleMolecular biology and evolution2021

Historical Contingency Causes Divergence in Adaptive Expression of the lac Operon.

Kedar Karkare, Huei-Yi Lai, Ricardo B R Azevedo, Tim F Cooper

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. HybridFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kedar KarkareDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Huei-Yi LaiSchool of Natural and Computational Sciences, Massey University, Auckland, New Zealand.
Ricardo B R AzevedoDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Tim F CooperDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.ORCID 0000-0001-5038-9366
University of Houston · USMassey University · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Populations of Escherichia coli selected in constant and fluctuating environments containing lactose often adapt by substituting mutations in the lacI repressor that cause constitutive expression of the lac operon. These mutations occur at a high rate and provide a significant benefit. Despite this, eight of 24 populations evolved for 8,000 generations in environments containing lactose contained no detectable repressor mutations. We report here on the basis of this observation. We find that, given relevant mutation rates, repressor mutations are expected to have fixed in all evolved populations if they had maintained the same fitness effect they confer when introduced to the ancestor. In fact, reconstruction experiments demonstrate that repressor mutations have become neutral or deleterious in those populations in which they were not detectable. Populations not fixing repressor mutations nevertheless reached the same fitness as those that did fix them, indicating that they followed an alternative evolutionary path that made redundant the potential benefit of the repressor mutation, but involved unique mutations of equivalent benefit. We identify a mutation occurring in the promoter region of the uspB gene as a candidate for influencing the selective choice between these paths. Our results detail an example of historical contingency leading to divergent evolutionary outcomes.

Indexed as

Biological EvolutionGene Expression Regulation, BacterialLac OperonAdaptation, BiologicalEscherichia coliEscherichia coli ProteinsGene ExpressionGenetic FitnessLac RepressorsMembrane ProteinsMutationEscherichia coli ProteinsLacI protein, E coliLac RepressorsMembrane ProteinsUspB protein, E coliadaptationepistasisgene expressionlac operon, experimental evolution

Identifiers

PMID33744956
PMCPMC8233506
OpenAlexW3139127955

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.