Evidence map›Paper›PMID 33744263›Full record

ArticleBiophysical journal2021

Mechanism of ArcLight derived GEVIs involves electrostatic interactions that can affect proton wires.

Bok Eum Kang, Lee Min Leong, Yoonkyung Kim, Kenichi Miyazaki, William N Ross, Bradley J Baker

Abstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bok Eum KangBrain Science Institute, Korea Institute of Science and Technology, Seongbuk-gu, Seoul, Republic of Korea.
Lee Min LeongBrain Science Institute, Korea Institute of Science and Technology, Seongbuk-gu, Seoul, Republic of Korea; Division of Bio-Medical Science and Technology, KIST School, Korea University of Science and Technology (UST), Seoul, Republic of Korea.
Yoonkyung KimBrain Science Institute, Korea Institute of Science and Technology, Seongbuk-gu, Seoul, Republic of Korea.
Kenichi MiyazakiDepartment of Physiology, New York Medical College, Valhalla, New York.
William N RossDepartment of Physiology, New York Medical College, Valhalla, New York.
Bradley J BakerBrain Science Institute, Korea Institute of Science and Technology, Seongbuk-gu, Seoul, Republic of Korea; Division of Bio-Medical Science and Technology, KIST School, Korea University of Science and Technology (UST), Seoul, Republic of Korea. Electronic address: bradley.baker19@gmail.com.

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
New approaches for better protein voltage sensorsU01NS099691 · NINDS · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2016 to 2018
$2.1M
Combined sodium and calcium imaging of dendritic functionR01NS099122 · NINDS · NEW YORK MEDICAL COLLEGE · PI ROSS, WILLIAM NOEL · 2016 to 2019
$1.4M
NIGMS NIH HHS P41 GM103311NINDS NIH HHS R01 NS099122NINDS NIH HHS U01 NS099691
6 · The paper itself

Abstract

The genetically encoded voltage indicators ArcLight and its derivatives mediate voltage-dependent optical signals by intermolecular, electrostatic interactions between neighboring fluorescent proteins (FPs). A random mutagenesis event placed a negative charge on the exterior of the FP, resulting in a greater than 10-fold improvement of the voltage-dependent optical signal. Repositioning this negative charge on the exterior of the FP reversed the polarity of voltage-dependent optical signals, suggesting the presence of "hot spots" capable of interacting with the negative charge on a neighboring FP, thereby changing the fluorescent output. To explore the potential effect on the chromophore state, voltage-clamp fluorometry was performed with alternating excitation at 390 nm followed by excitation at 470 nm, resulting in several mutants exhibiting voltage-dependent, ratiometric optical signals of opposing polarities. However, the kinetics, voltage ranges, and optimal FP fusion sites were different depending on the wavelength of excitation. These results suggest that the FP has external, electrostatic pathways capable of quenching fluorescence that are wavelength specific. One mutation to the FP (E222H) showed a voltage-dependent increase in fluorescence when excited at 390 nm, indicating the ability to affect the proton wire from the protonated chromophore to the H222 position. ArcLight-derived sensors may therefore offer a novel way to map how conditions external to the β-can structure can affect the fluorescence of the chromophore and transiently affect those pathways via conformational changes mediated by manipulating membrane potential.

Indexed as

ProtonsHEK293 CellsHumansLuminescent ProteinsMembrane PotentialsStatic ElectricityLuminescent ProteinsProtons

Identifiers

PMID33744263
PMCPMC8204334

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.