Evidence map›Paper›PMID 33742128›Full record

ArticleCommunications biology2021

The structure of a major surface antigen SAG19 from Eimeria tenella unifies the Eimeria SAG family.

Nur Zazarina Ramly, Samuel R Dix, Sergey N Ruzheinikov, Svetlana E Sedelnikova, Patrick J Baker, Yock-Ping Chow, Fiona M Tomley, Damer P Blake, Kiew-Lian Wan, Sheila Nathan and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. RNA-Seq of Phenotypically DistinctPathogens (Basel, Switzerland) · 2023
    Article
  6. Proteomic Analysis of FractionatedInternational journal of molecular sciences · 2023
    Article
  7. Review
  8. Prokaryotic Expression ofInternational journal of molecular sciences · 2022
    Article
  9. Eimeria proteins: order amidst disorder.Parasites & vectors · 2022
    Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Nur Zazarina Ramly *Department of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, UK.
Samuel R Dix *Department of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, UK.ORCID http://orcid.org/0000-0002-6907-1435
Sergey N RuzheinikovDepartment of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, UK.
Svetlana E SedelnikovaDepartment of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, UK.
Patrick J BakerDepartment of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, UK.ORCID http://orcid.org/0000-0003-1995-5643
Yock-Ping ChowFaculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia.
Fiona M TomleyRoyal Veterinary College, Hertfordshire, UK.
Damer P BlakeRoyal Veterinary College, Hertfordshire, UK.
Kiew-Lian WanFaculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia. klwan@ukm.edu.my.ORCID http://orcid.org/0000-0003-4027-1211
Sheila NathanFaculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia. sheila@ukm.edu.my.ORCID http://orcid.org/0000-0002-2132-2346
David W RiceDepartment of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, UK. D.Rice@sheffield.ac.uk.ORCID http://orcid.org/0000-0002-7811-0539
National University of Malaysia · MYUniversity of Sheffield · GBRoyal Veterinary College · GBUniversiti Sains Islam Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In infections by apicomplexan parasites including Plasmodium, Toxoplasma gondii, and Eimeria, host interactions are mediated by proteins including families of membrane-anchored cysteine-rich surface antigens (SAGs) and SAG-related sequences (SRS). Eimeria tenella causes caecal coccidiosis in chickens and has a SAG family with over 80 members making up 1% of the proteome. We have solved the structure of a representative E. tenella SAG, EtSAG19, revealing that, despite a low level of sequence similarity, the entire Eimeria SAG family is unified by its three-layer αβα fold which is related to that of the CAP superfamily. Furthermore, sequence comparisons show that the Eimeria SAG fold is conserved in surface antigens of the human coccidial parasite Cyclospora cayetanensis but this fold is unrelated to that of the SAGs/SRS proteins expressed in other apicomplexans including Plasmodium species and the cyst-forming coccidia Toxoplasma gondii, Neospora caninum and Besnoitia besnoiti. However, despite having very different structures, Consurf analysis showed that Eimeria SAG and Toxoplasma SRS families each exhibit marked hotspots of sequence hypervariability that map to their surfaces distal to the membrane anchor. This suggests that the primary and convergent purpose of the different structures is to provide a platform onto which sequence variability can be imposed.

Indexed as

Antigens, ProtozoanCrystallography, X-RayEimeria tenellaEvolution, MolecularGenetic VariationModels, MolecularProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein FoldingProtozoan ProteinsStructure-Activity RelationshipAntigens, ProtozoanProtozoan Proteins

Identifiers

PMID33742128
PMCPMC7979774
OpenAlexW3136391795

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.