Evidence map›Paper›PMID 33741650›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2021

Structural Variants at the

Ailith Ewing, Alison Meynert, Michael Churchman, Graeme R Grimes, Robert L Hollis, C Simon Herrington, Tzyvia Rye, Clare Bartos, Ian Croy, Michelle Ferguson and 21 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. UnderreportingGynecologic oncology reports · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Multiomic Characterization of High-Grade Serous Ovarian Carcinoma Enables High-Resolution Patient Stratification.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  16. Article
  17. Review
  18. The Genomic Landscape of Early-Stage Ovarian High-Grade Serous Carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 12 institutions in 6 countries.

Ailith EwingMRC Human Genetics Unit, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom. ailith.ewing@igmm.ed.ac.uk.ORCID 0000-0002-2272-1277
Alison MeynertMRC Human Genetics Unit, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0001-5839-1751
Michael ChurchmanNicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0003-1958-7692
Graeme R GrimesMRC Human Genetics Unit, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.
Robert L HollisNicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0002-1390-3298
C Simon HerringtonNicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0001-9177-8165
Tzyvia RyeNicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.
Clare BartosNicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.
Ian CroyNicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.
Michelle FergusonDepartment of Oncology, Ninewells Hospital, NHS Tayside, Dundee, Scotland, United Kingdom.
Mairi LennieDivision of Molecular and Clinical Medicine, School of Medicine, University of Dundee, Dundee, Scotland, United Kingdom.
Trevor McGoldrickDepartment of Oncology, Aberdeen Royal Infirmary, Aberdeen, Scotland, United Kingdom.
Neil McPhailDepartment of Oncology, Raigmore Hospital, NHS Highland, Inverness, Scotland, United Kingdom.
Nadeem SiddiquiDepartment of Gynaecological Oncology, Glasgow Royal Infirmary, Glasgow, Scotland, United Kingdom.
Suzanne DowsonInstitute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, University of Glasgow, Glasgow, Scotland, United Kingdom.ORCID 0000-0003-2511-1965
Rosalind GlasspoolBeatson West of Scotland Cancer Centre and University of Glasgow, Glasgow, Scotland, United Kingdom.ORCID 0000-0002-5000-1680
Melanie MackeanEdinburgh Cancer Centre, Western General Hospital, NHS Lothian, Edinburgh, Scotland, United Kingdom.
Fiona NusseyEdinburgh Cancer Centre, Western General Hospital, NHS Lothian, Edinburgh, Scotland, United Kingdom.
Brian McDadeInstitute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, University of Glasgow, Glasgow, Scotland, United Kingdom.
Darren EnnisInstitute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, University of Glasgow, Glasgow, Scotland, United Kingdom.
Lynn McMahonPrecision Medicine Scotland (PMS-IC), Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
Athena MatakidouDiscovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, England, United Kingdom.ORCID 0000-0002-8656-3802
Brian DoughertyTranslational Medicine, Oncology R&D, AstraZeneca, Waltham, Massachusetts.
Ruth MarchPrecision Medicine, Oncology R&D, AstraZeneca, Cambridge, England, United Kingdom.
J Carl BarrettTranslational Medicine, Oncology R&D, AstraZeneca, Waltham, Massachusetts.
Iain A McNeishInstitute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, University of Glasgow, Glasgow, Scotland, United Kingdom.ORCID 0000-0002-9387-7586
Scottish Genomes Partnership
Andrew V BiankinInstitute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, University of Glasgow, Glasgow, Scotland, United Kingdom.ORCID 0000-0002-0362-5597
Patricia Roxburgh *Institute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, University of Glasgow, Glasgow, Scotland, United Kingdom.ORCID 0000-0001-9869-591X
Charlie Gourley *Nicola Murray Centre for Ovarian Cancer Research, Cancer Research UK Edinburgh Centre, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0002-2377-7221
Colin A Semple *MRC Human Genetics Unit, MRC IGMM, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0003-1765-4118
Beatson West of Scotland Cancer Centre · GBEdinburgh Cancer Research · GBInstitute of Genetics and Cancer · GBAstraZeneca (Brazil) · BRNHS Lothian · GBUniversity of Dundee · GBAstraZeneca (Singapore) · SGAstraZeneca (Spain) · ESGlasgow Royal Infirmary · GBQueen Elizabeth University Hospital · GBRaigmore Hospital · GBUniversity of Aberdeen · GB

Funding

Cancer Research UK A17263Cancer Research UK A18484Cancer Research UK A23526Cancer Research UK C29717/A17263Cancer Research UK C29717/A18484Cancer Research UK C596/A18076Cancer Research UK C596/A20921Medical Research Council MC_PC_15080Medical Research Council MC_UU_00007/16Medical Research Council MR/R026017/1Wellcome TrustWellcome Trust 103721/Z/14/Z
6 · The paper itself

Abstract

purposeThe abundance and effects of structural variation at BRCA1/2 in tumors are not well understood. In particular, the impact of these events on homologous recombination repair deficiency (HRD) has yet to be demonstrated. EXPERIMENTAL

designExploiting a large collection of whole-genome sequencing data from high-grade serous ovarian carcinoma (

resultsIn addition to the known spectrum of short somatic mutations (SSM), we discovered that multi-megabase structural variants (SV) were a frequent, unappreciated source of

conclusionsThese results extend our understanding of the mutational landscape underlying HRD, increase the number of patients predicted to benefit from therapies exploiting HRD, and suggest there is currently untapped potential in SV detection for patient stratification.

Indexed as

BRCA1 ProteinBRCA2 ProteinCystadenocarcinoma, SerousFemaleGene ExpressionHomologous RecombinationHumansMutationOvarian NeoplasmsRecombinational DNA RepairWhole Genome SequencingBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, human

Identifiers

PMID33741650
PMCPMC7610896
OpenAlexW3139290764

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.