Evidence map›Paper›PMID 33741315›Full record

ArticleGastroenterology2021

Bacterial Swarmers Enriched During Intestinal Stress Ameliorate Damage.

Arpan De, Weijie Chen, Hao Li, Justin R Wright, Regina Lamendella, Dana J Lukin, Wendy A Szymczak, Katherine Sun, Libusha Kelly, Subho Ghosh and 12 more

Open access · greenAbstract read
In one paragraph

Article in Gastroenterology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 1 country.

Arpan DeDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York.
Weijie ChenDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York; Department of Physics, Brown University, Providence, Rhode Island.
Hao LiDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York.
Justin R WrightWright Labs, LLC, Huntington, Pennsylvania.
Regina LamendellaJuniata College, Huntingdon, Pennsylvania.
Dana J LukinJill Roberts Center for Inflammatory Bowel Disease, New York, New York.
Wendy A SzymczakDepartment of Pathology, Montefiore Medical Center, Bronx, New York.
Katherine SunDepartment of Pathology, New York University Langone Health, New York, New York.
Libusha KellyDepartment of Systems & Computational Biology, and Department of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York.
Subho GhoshDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York.
Daniel B KearnsDepartment of Biology, Indiana University Bloomington, Bloomington, Indiana.
Zhen HeDepartment of Medicine, University of Florida, Gainesville, Florida.
Christian JobinDepartment of Medicine, University of Florida, Gainesville, Florida.
Xiaoping LuoDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York.
Arjun ByjuDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York.
Shirshendu ChatterjeeDepartment of Mathematics, The City University of New York, City College & Graduate Center, New York, New York.
Beng San YeohThe University of Toledo-Microbiome Consortium, Department of Physiology & Pharmacology, University of Toledo, College of Medicine & Life Sciences, Toledo, Ohio.
Matam Vijay-KumarThe University of Toledo-Microbiome Consortium, Department of Physiology & Pharmacology, University of Toledo, College of Medicine & Life Sciences, Toledo, Ohio.
Jay X TangDepartment of Physics, Brown University, Providence, Rhode Island.
Milankumar PrajapatiDepartment of Pathology and Laboratory Medicine, Brown University, Providence, Rhode Island.
Thomas B BartnikasDepartment of Pathology and Laboratory Medicine, Brown University, Providence, Rhode Island.
Sridhar ManiDepartment of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York. Electronic address: sridhar.mani@einsteinmed.org.
Albert Einstein College of Medicine · USBrown University · USUniversity of Florida · USUniversity of Toledo · USCity College · USIndiana University Bloomington · USJuniata College · USMontefiore Medical Center · USNYU Langone Health · USWright Materials Research (United States) · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Core-010UL1TR001073 · NCATS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KELLER, MARLA J, SHAMOON, HARRY · 2013 to 2017
$21.3M
Developmental PBDE exposure, gut microbiome, and diabetesR01ES030197 · NIEHS · UNIVERSITY OF WASHINGTON · PI Julia Yue Cui, Haiwei Gu · 2019 to 2026
$5.0M
Molecular Basis of Mammalian Manganese HomeostasisR01DK110049 · NIDDK · BROWN UNIVERSITY · PI BARTNIKAS, THOMAS BENEDICT · 2016 to 2025
$3.6M
Microbial Metabolite Mimics, PXR and Colitis-Induced Colorectal CancerR01CA222469 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI MANI, SRIDHAR · 2018 to 2022
$2.3M
Chemical Modulation of Orphan Nuclear Receptor FunctionR01CA127231 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI MANI, SRIDHAR · 2009 to 2014
$1.6M
Development of Novel Drugs to Alleviate CPT-11 ToxicityR01CA161879 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI MANI, SRIDHAR, REDINBO, MATTHEW R · 2012 to 2016
$1.6M
Structural Basis for Hormone and Neurotransmitter Processing by Gut Microbial EnzymesR01GM135218 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI REDINBO, MATTHEW R · 2019 to 2022
$1.5M
LTQ Orbitrap Velos Mass Spectrometer SystemS10RR029398 · NCRR · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ANGELETTI, RUTH HOGUE · 2010 to 2010
$963k
High-speed/resolution whole slide scanner supported by two core facilitiesS10OD019961 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI CONDEELIS, JOHN S · 2015 to 2015
$326k
NCATS NIH HHS UL1 TR001073NCI NIH HHS P30 CA013330NCI NIH HHS R01 CA127231NCI NIH HHS R01 CA161879NCI NIH HHS R01 CA222469NCRR NIH HHS S10 RR029398NIDDK NIH HHS R01 DK110049NIEHS NIH HHS R01 ES030197NIGMS NIH HHS R01 GM135218NIH HHS S10 OD019961
6 · The paper itself

Abstract

BACKGROUND AND

aimsBacterial swarming, a collective movement on a surface, has rarely been associated with human pathophysiology. This study aims to define a role for bacterial swarmers in amelioration of intestinal stress.

methodsWe developed a polymicrobial plate agar assay to detect swarming and screened mice and humans with intestinal stress and inflammation. From chemically induced colitis in mice, as well as humans with inflammatory bowel disease, we developed techniques to isolate the dominant swarmers. We developed swarm-deficient but growth and swim-competent mutant bacteria as isogenic controls. We performed bacterial reinoculation studies in mice with colitis, fecal 16S, and meta-transcriptomic analyses, as well as in vitro microbial interaction studies.

resultsWe show that bacterial swarmers are highly predictive of intestinal stress in mice and humans. We isolated a novel Enterobacter swarming strain, SM3, from mouse feces. SM3 and other known commensal swarmers, in contrast to their mutant strains, abrogated intestinal inflammation in mice. Treatment of colitic mice with SM3, but not its mutants, enriched beneficial fecal anaerobes belonging to the family of Bacteroidales S24-7. We observed SM3 swarming associated pathways in the in vivo fecal meta-transcriptomes. In vitro growth of S24-7 was enriched in presence of SM3 or its mutants; however, because SM3, but not mutants, induced S24-7 in vivo, we concluded that swarming plays an essential role in disseminating SM3 in vivo.

conclusionsOverall, our work identified a new but counterintuitive paradigm in which intestinal stress allows for the emergence of swarming bacteria; however, these bacteria act to heal intestinal inflammation.

Indexed as

Gastrointestinal MicrobiomeWound HealingAdultAgedAged, 80 and overAnimalsBacteriological TechniquesColitisDisease Models, AnimalDysbiosisEnterobacterFecesFemaleHumansInflammatory Bowel DiseasesIntestinal MucosaEnterobacterFecesIntestinal StressProtectionS24-7

Identifiers

PMID33741315
PMCPMC8601393
OpenAlexW3138584131

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.