Evidence map›Paper›PMID 33740955›Full record

ArticleBMC biology2021

Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish.

Duílio Mazzoni Zerbinato de Andrade Silva, Francisco J Ruiz-Ruano, Ricardo Utsunomia, María Martín-Peciña, Jonathan Pena Castro, Paula Paccielli Freire, Robson Francisco Carvalho, Diogo T Hashimoto, Alexander Suh, Claudio Oliveira and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. B Chromosomes inAnimals : an open access journal from MDPI · 2022
    Review
  8. Article
  9. Satellite DNA Is an Inseparable Fellow Traveler of B Chromosomes.Progress in molecular and subcellular biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Duílio Mazzoni Zerbinato de Andrade Silva *Departamento de Biologia Estrutural e Funcional, Instituto de Biociências de Botucatu, Universidade Estadual Paulista, UNESP, Distrito de Rubião Junior, Botucatu, SP, 18618-970, Brazil.ORCID 0000-0002-2610-2254
Francisco J Ruiz-Ruano *Department of Organismal Biology - Systematic Biology, Evolutionary Biology Centre, Uppsala University, SE-752 36, Uppsala, Sweden. francisco.ruiz-ruano@ebc.uu.se.ORCID 0000-0002-5391-301X
Ricardo UtsunomiaDepartamento de Genética, Instituto de Ciências Biológicas e da Saúde, ICBS, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brazil.ORCID 0000-0003-4565-6065
María Martín-PeciñaDepartamento de Genética, Universidad de Granada, 18071, Granada, Spain.
Jonathan Pena CastroDepartamento de Genética e Evolução, Universidade Federal de São Carlos, UFSCAR, São Carlos, SP, 13565-905, Brazil.ORCID 0000-0003-0887-1081
Paula Paccielli FreireDepartamento de Biologia Estrutural e Funcional, Instituto de Biociências de Botucatu, Universidade Estadual Paulista, UNESP, Distrito de Rubião Junior, Botucatu, SP, 18618-970, Brazil.ORCID 0000-0003-0649-8279
Robson Francisco CarvalhoDepartamento de Biologia Estrutural e Funcional, Instituto de Biociências de Botucatu, Universidade Estadual Paulista, UNESP, Distrito de Rubião Junior, Botucatu, SP, 18618-970, Brazil.ORCID 0000-0002-4901-7714
Diogo T HashimotoCentro de Aquicultura, Universidade Estadual Paulista, UNESP, Campus Jaboticabal, Jaboticabal, SP, 14884-900, Brazil.ORCID 0000-0002-8808-2498
Alexander SuhDepartment of Organismal Biology - Systematic Biology, Evolutionary Biology Centre, Uppsala University, SE-752 36, Uppsala, Sweden.ORCID 0000-0002-8979-9992
Claudio OliveiraDepartamento de Biologia Estrutural e Funcional, Instituto de Biociências de Botucatu, Universidade Estadual Paulista, UNESP, Distrito de Rubião Junior, Botucatu, SP, 18618-970, Brazil.ORCID 0000-0002-7010-8880
Fábio Porto-ForestiDepartamento de Ciências Biológicas, Faculdade de Ciências, Universidade Estadual Paulista, UNESP, Campus de Bauru, Bauru, SP, 17033-360, Brazil.ORCID 0000-0001-8845-3845
Roberto Ferreira ArtoniDepartamento de Genética e Evolução, Universidade Federal de São Carlos, UFSCAR, São Carlos, SP, 13565-905, Brazil.ORCID 0000-0002-2528-9846
Fausto ForestiDepartamento de Biologia Estrutural e Funcional, Instituto de Biociências de Botucatu, Universidade Estadual Paulista, UNESP, Distrito de Rubião Junior, Botucatu, SP, 18618-970, Brazil.
Juan Pedro M CamachoDepartamento de Genética, Universidad de Granada, 18071, Granada, Spain. jpmcamac@ugr.es.ORCID 0000-0002-2507-9814
Universidade Estadual Paulista (Unesp) · BRUniversidad de Granada · ESUniversidade Federal de São Carlos · BRUniversity of East Anglia · GBUniversidade de São Paulo · BRUniversidade Federal Rural do Rio de Janeiro · BR

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) 306054/2006-0Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) 2013/24143-5, 2017/22447-8Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) 2014/09634-5Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) 2018/20610-1, 2016/09204-6, 2014/26508-3Spanish Secretaría de Estado de Investigación, Desarrollo e Innovación CGL2015-70750-P
6 · The paper itself

Abstract

backgroundEukaryote genomes frequently harbor supernumerary B chromosomes in addition to the "standard" A chromosome set. B chromosomes are thought to arise as byproducts of genome rearrangements and have mostly been considered intraspecific oddities. However, their evolutionary transcendence beyond species level has remained untested.

resultsHere we reveal that the large metacentric B chromosomes reported in several fish species of the genus Astyanax arose in a common ancestor at least 4 million years ago. We generated transcriptomes of A. scabripinnis and A. paranae 0B and 1B individuals and used these assemblies as a reference for mapping all gDNA and RNA libraries to quantify coverage differences between B-lacking and B-carrying genomes. We show that the B chromosomes of A. scabripinnis and A. paranae share 19 protein-coding genes, of which 14 and 11 were also present in the B chromosomes of A. bockmanni and A. fasciatus, respectively. Our search for B-specific single-nucleotide polymorphisms (SNPs) identified the presence of B-derived transcripts in B-carrying ovaries, 80% of which belonged to nobox, a gene involved in oogenesis regulation. Importantly, the B chromosome nobox paralog is expressed > 30× more than the A chromosome paralog. This indicates that the normal regulation of this gene is altered in B-carrying females, which could potentially facilitate B inheritance at higher rates than Mendelian law prediction.

conclusionsTaken together, our results demonstrate the long-term survival of B chromosomes despite their lack of regular pairing and segregation during meiosis and that they can endure episodes of population divergence leading to species formation.

Indexed as

GenomePolymorphism, Single NucleotideAnimalsCharacidaeChromosome MappingChromosomesFemaleMaleSpecies SpecificityAstyanaxB chromosomesEvolutionGenomicsTranscriptomics

Identifiers

PMID33740955
PMCPMC7976721
OpenAlexW3136169294

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.