Evidence map›Paper›PMID 33740020›Full record

ArticlePLoS pathogens2021

Compromised base excision repair pathway in Mycobacterium tuberculosis imparts superior adaptability in the host.

Saba Naz, Shruti Dabral, Sathya Narayanan Nagarajan, Divya Arora, Lakshya Veer Singh, Pradeep Kumar, Yogendra Singh, Dhiraj Kumar, Umesh Varshney, Vinay Kumar Nandicoori

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Usnic Acid Derivatives as Inhibitors ofInternational journal of molecular sciences · 2026
    Article
  2. Recent Characterization of Key Proteins to Combat Tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  3. Article
  4. Article
  5. Protocol forSTAR protocols · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Transcriptional Response ofFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Saba NazSignal Transduction Lab, National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, India.
Shruti DabralCellular Immunology Group, International Center for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, India.
Sathya Narayanan NagarajanSignal Transduction Lab, National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, India.ORCID 0000-0002-3902-3678
Divya AroraSignal Transduction Lab, National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, India.
Lakshya Veer SinghCellular Immunology Group, International Center for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, India.
Pradeep KumarDepartment of Microbiology & Cell Biology, Indian Institute of Sciences, Bangalore, India.ORCID 0000-0003-0042-7525
Yogendra SinghDepartment of Zoology, University of Delhi, Delhi, India.
Dhiraj KumarCellular Immunology Group, International Center for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, India.
Umesh VarshneyDepartment of Microbiology & Cell Biology, Indian Institute of Sciences, Bangalore, India.ORCID 0000-0003-3196-5908
Vinay Kumar NandicooriSignal Transduction Lab, National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, India.ORCID 0000-0002-5682-4178
International Centre for Genetic Engineering and Biotechnology · INNational Institute of Immunology · INUniversity of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis caused by Mycobacterium tuberculosis (Mtb) is a significant public health concern, exacerbated by the emergence of drug-resistant TB. To combat the host's dynamic environment, Mtb encodes multiple DNA repair enzymes that play a critical role in maintaining genomic integrity. Mtb possesses a GC-rich genome, rendering it highly susceptible to cytosine deaminations, resulting in the occurrence of uracils in the DNA. UDGs encoded by ung and udgB initiate the repair; hence we investigated the biological impact of deleting UDGs in the adaptation of pathogen. We generated gene replacement mutants of uracil DNA glycosylases, individually (RvΔung, RvΔudgB) or together (RvΔdKO). The double KO mutant, RvΔdKO exhibited remarkably higher spontaneous mutation rate, in the presence of antibiotics. Interestingly, RvΔdKO showed higher survival rates in guinea pigs and accumulated large number of SNPs as revealed by whole-genome sequence analysis. Competition assays revealed the superior fitness of RvΔdKO over Rv, both in ex vivo and in vivo conditions. We propose that compromised DNA repair results in the accumulation of mutations, and a subset of these drives adaptation in the host. Importantly, this property allowed us to utilize RvΔdKO for the facile identification of drug targets.

Indexed as

Adaptation, PhysiologicalAnimalsDNA RepairGuinea PigsHost SpecificityMiceMycobacterium tuberculosis

Identifiers

PMID33740020
PMCPMC8011731
OpenAlexW3136236485

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.