Evidence map›Paper›PMID 33739856›Full record

ArticleJCO clinical cancer informatics2021

Clinical Data Prediction Model to Identify Patients With Early-Stage Pancreatic Cancer.

Qinyu Chen, Daniel R Cherry, Vinit Nalawade, Edmund M Qiao, Abhishek Kumar, Andrew M Lowy, Daniel R Simpson, James D Murphy

Abstract read
In one paragraph

Article in JCO clinical cancer informatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Diagnostic Risk Prediction Models for Upper Gastrointestinal Cancers: A Systematic Review.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
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  13. Identification of pancreatic cancer risk factors from clinical notes using natural language processing.Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Qinyu ChenDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.ORCID 0000-0002-9351-2085
Daniel R CherryDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.ORCID 0000-0002-6441-9172
Vinit NalawadeDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.ORCID 0000-0002-6594-6740
Edmund M QiaoDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.
Abhishek KumarDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.ORCID 0000-0002-2306-8863
Andrew M LowyDepartment of Surgery, University of California San Diego, La Jolla, CA.ORCID 0000-0002-7106-0735
Daniel R SimpsonDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.ORCID 0000-0003-4146-7371
James D MurphyDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA.ORCID 0000-0002-0523-9091

Funding

UC San Diego Clinical and Translational Research InstituteTL1TR001443 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DEPP, COLIN A. · 2015 to 2019
$3.4M
NCATS NIH HHS TL1 TR001443
6 · The paper itself

Abstract

purposePancreatic cancer is an aggressive malignancy with patients often experiencing nonspecific symptoms before diagnosis. This study evaluates a machine learning approach to help identify patients with early-stage pancreatic cancer from clinical data within electronic health records (EHRs). MATERIALS AND

methodsFrom the Optum deidentified EHR data set, we identified early-stage (n = 3,322) and late-stage (n = 25,908) pancreatic cancer cases over 40 years of age diagnosed between 2009 and 2017. Patients with early-stage pancreatic cancer were matched to noncancer controls (1:16 match). We constructed a prediction model using eXtreme Gradient Boosting (XGBoost) to identify early-stage patients on the basis of 18,220 features within the EHR including diagnoses, procedures, information within clinical notes, and medications. Model accuracy was assessed with sensitivity, specificity, positive predictive value, and the area under the curve.

resultsThe final predictive model included 582 predictive features from the EHR, including 248 (42.5%) physician note elements, 146 (25.0%) procedure codes, 91 (15.6%) diagnosis codes, 89 (15.3%) medications, and 9 (1.5%) demographic features. The final model area under the curve was 0.84. Choosing a model cut point with a sensitivity of 60% and specificity of 90% would enable early detection of 58% late-stage patients with a median of 24 months before their actual diagnosis.

conclusionPrediction models using EHR data show promise in the early detection of pancreatic cancer. Although widespread use of this approach on an unselected population would produce high rates of false-positive tests, this technique may be rapidly impactful if deployed among high-risk patients or paired with other imaging or biomarker screening tools.

Indexed as

Early Detection of CancerPancreatic NeoplasmsElectronic Health RecordsHumansMachine LearningPredictive Value of Tests

Identifiers

PMID33739856
PMCPMC8462624

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.