Evidence map›Paper›PMID 33739370›Full record

ArticleBioscience reports2021

Identification of differentially expressed genes and the role of PDK4 in CD14+ monocytes of coronary artery disease.

Pei Du, Ren Guo, Keqin Gao, Shuang Yang, Baige Yao, Haobo Cui, Ming Zhao, Sujie Jia

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Pei Du *Department of Pharmacy, The Third Xiangya Hospital, Central South University, Changsha 410013, Hunan, China.
Ren Guo *Department of Pharmacy, The Third Xiangya Hospital, Central South University, Changsha 410013, Hunan, China.
Keqin GaoDepartment of Pharmacy, Weifang People's Hospital, Weifang 261000, Shandong, China.
Shuang YangDepartment of Dermatology, The Second Xiangya Hospital, Central South University, Hunan Key Laboratory of Medical Epigenomics, Changsha 410013, Hunan, China.
Baige YaoDepartment of Pharmacy, The Third Xiangya Hospital, Central South University, Changsha 410013, Hunan, China.
Haobo CuiDepartment of Pharmacy, The Third Xiangya Hospital, Central South University, Changsha 410013, Hunan, China.
Ming ZhaoDepartment of Dermatology, The Second Xiangya Hospital, Central South University, Hunan Key Laboratory of Medical Epigenomics, Changsha 410013, Hunan, China.
Sujie JiaDepartment of Pharmacy, The Third Xiangya Hospital, Central South University, Changsha 410013, Hunan, China.
Central South University · CNWeifang People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoronary artery disease (CAD) is a chronic inflammatory disease caused by development of atherosclerosis (AS), which is the leading cause of mortality and disability. Our study aimed to identify the differentially expressed genes (DEGs) in CD14+ monocytes from CAD patients compared with those from non-CAD controls, which might pave the way to diagnosis and treatment for CAD.

methodsThe RNA-sequencing (RNA-seq) was performed by BGISEQ-500, followed by analyzing with R package to screening DEGs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed by R package. In addition, we validated the results of RNA-seq using real-time quantitative polymerase chain reaction (RT-qPCR). Furthermore, we explored the function of selected ten genes in LDL-treated CD14+ monocytes by RT-qPCR.

resultsa total of 2897 DEGs were identified, including 753 up- and 2144 down-regulated genes in CD14+ monocytes from CAD patients. These DEGs were mainly enriched in plasma membrane and cell periphery of cell component, immune system process of biological process, NF-κB signaling pathway, cell adhesion molecules signaling pathway and cytokine-cytokine receptor interaction signaling pathway. In LDL-treated CD14+ monocytes, the mRNA expression of pyruvate dehydrogenase kinase 4 (PDK4) was significantly up-regulated.

conclusionIn the present study, we suggested that PDK4 might play a role in progression of CAD. The study will provide some pieces of evidence to investigate the role and mechanism of key genes in the pathogenesis of CAD.

Indexed as

Coronary Artery DiseaseFemaleHumansLipopolysaccharide ReceptorsMaleMiddle AgedMonocytesNF-kappa BPyruvate Dehydrogenase Acetyl-Transferring KinaseTranscriptomeUp-RegulationLipopolysaccharide ReceptorsNF-kappa BPDK4 protein, humanPyruvate Dehydrogenase Acetyl-Transferring Kinasecoronary artery diseasedifferentially expressed genesmonocytes

Identifiers

PMID33739370
PMCPMC8024870
OpenAlexW3136448529

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.