ArticleNature genetics2021
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential.
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Article in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.
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146citing papers in PubMed
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146 citing papers in PubMed.
- Distinct associations of ScGDD1/BC12 transcript abundance and sequence variation with grain size and shape in rye.Journal of applied genetics · 2026Article
- Transposable element-driven expansion of enhancer RNA repertoires underlies regulatory innovation and polyploid adaptation in cereal crops.Plant communications · 2026Article
- Unveiling centromeric retrotransposon dynamics through a high-quality rye genome assembly.Nature communications · 2026Article
- Breeding 5.0: Artificial intelligence (AI)-decoded germplasm for accelerated crop innovation.Journal of integrative plant biology · 2026Article
- Review
- Introgression of rye chromosome arm 1RS enhances climate resilience in German winter wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Review
- Mapping and marker development of the rye-derived Hessian fly resistance gene H25 in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Distinct evolutionary trajectories of gene duplication modes in 40 diploid cotton genomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Transposable element dynamics drive rapid evolution of centromere architecture in the Avena genus.Genome biology · 2026Article
- Fine mapping and candidate gene identification of the stripe rust resistance gene Yr83 using mutated wheat-rye translocation lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- An NLR-transposase fusion gene from rye provides broadly effective resistance to stripe rust in wheat.Nature plants · 2026Article
- Influence of long-term nutrient deficiency on pollen and anther morphological traits in rye.Journal of experimental botany · 2026Article
- Article
- Lineage-specific expansion and functional diversification of mTERF proteins sculpt organellar regulation in plants.BMC plant biology · 2026Article
- Epigenome and interactome profiling uncovers principles of distal regulation in the barley genome.Cell genomics · 2026Article
- Using wheat-rye 1BL.1RS translocations to disclose the effects of subtelomeric tandem repeats on meiotic behavior of homologues.BMC plant biology · 2026Article
- Genetic analysis of a quantitative trait locus associated with resistance to the root-lesion nematode Pratylenchus neglectus in triticale.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Population genomics of Aosta Valley rye landraces reveals genetic structure and diversity patterns relevant for germplasm conservation.Frontiers in plant science · 2026Article
- Time-course transcriptome and WGCNA reveal tissue-specific genes in 'White BK-1' rye during early cold acclimation stage.Frontiers in plant science · 2026Article
86 more citing papers are in PubMed but not listed here.
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Authors and funding
63 authors.
M Timothy Rabanus-WallaceLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.
Bernd HackaufInstitute for Breeding Research on Agricultural Crops, Julius Kühn-Institut, Sanitz, Germany.
Martin MascherLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.ORCID http://orcid.org/0000-0001-6373-6013
Thomas LuxPlant Genome and Systems Biology (PGSB), Helmholtz-Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-5543-1911
Thomas WickerUniversity of Zürich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-6777-7135
Heidrun GundlachPlant Genome and Systems Biology (PGSB), Helmholtz-Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-6757-0943
Mariana BaezFederal University of Pernambuco, Pernambuco, Brazil.
Andreas HoubenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.ORCID http://orcid.org/0000-0003-3419-239X
Klaus F X MayerPlant Genome and Systems Biology (PGSB), Helmholtz-Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0001-6484-1077
Liangliang GuoKansas State University, Manhattan, KS, USA.ORCID http://orcid.org/0000-0002-3864-0631
Jesse PolandKansas State University, Manhattan, KS, USA.ORCID http://orcid.org/0000-0002-7856-1399
Curtis J PozniakUniversity of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID http://orcid.org/0000-0002-7536-3856
Sean WalkowiakUniversity of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID http://orcid.org/0000-0002-3866-5038
Joanna MelonekThe University of Western Australia, Crawley, Western Australia, Australia.ORCID http://orcid.org/0000-0003-4471-2520
Coraline R PrazUniversity of Zürich, Zurich, Switzerland.
Mona SchreiberLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.ORCID http://orcid.org/0000-0002-6771-6914
Hikmet BudakMontana BioAg Inc, Durham, NC, USA.ORCID http://orcid.org/0000-0002-2556-2478
Matthias HeubergerETH Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0003-3283-9233
Burkhard SteuernagelJohn Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0002-8284-7728
Brande WulffJohn Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0003-4044-4346
Andreas BörnerLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.ORCID http://orcid.org/0000-0003-3301-9026
Brook ByrnsUniversity of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Jana ČížkováInstitute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
D Brian FowlerUniversity of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Allan FritzKansas State University, Manhattan, KS, USA.
Axel HimmelbachLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.
Gemy KaithakottilEarlham Institute, Norwich, UK.
Jens KeilwagenInstitute for Biosafety in Plant Biotechnology, Julius Kühn-Institut, Quedlinburg, Germany.
Beat KellerUniversity of Zürich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-2379-9225
David KonkinAquatic and Crop Resource Development, National Research Council, Saskatoon, Saskatchewan, Canada.
Jamie LarsenHarrow Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada.
Qiang LiHuazhong Agricultural University, Wuhan, China.
Beata MyśkówWest Pomeranian University of Technology Szczecin, Szczecin, Poland.
Sudharsan PadmarasuLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.ORCID http://orcid.org/0000-0003-3125-3695
Nidhi RawatUniversity of Maryland, College Park, MD, USA.
Uğur SesizUniversity of Cukurova, Cukurova, Turkey.ORCID http://orcid.org/0000-0003-1234-4276
Sezgi Biyiklioglu-KayaSabanci University, Tuzla, Turkey.
Andy SharpeUniversity of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID http://orcid.org/0000-0002-1832-4009
Hana ŠimkováInstitute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0003-4159-7619
Ian SmallThe University of Western Australia, Crawley, Western Australia, Australia.ORCID http://orcid.org/0000-0001-5300-1216
David SwarbreckEarlham Institute, Norwich, UK.ORCID http://orcid.org/0000-0002-5453-1013
Helena ToegelováInstitute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0001-6983-0609
Natalia TsvetkovaSaint Petersburg State University, Saint Petersburg, Russia.ORCID http://orcid.org/0000-0002-7353-1107
Anatoly V VoylokovVavilov Institute of General Genetics, Russian Academy of Sciences, Saint Petersburg, Russia.ORCID http://orcid.org/0000-0003-3423-8511
Jan VránaInstitute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Eva BauerTUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany.ORCID http://orcid.org/0000-0002-4820-2846
Hanna Bolibok-BragoszewskaWarsaw University of Life Sciences-SGGW, Warsaw, Poland.ORCID http://orcid.org/0000-0002-8030-2716
Jaroslav DoleželInstitute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0002-6263-0492
Anthony HallEarlham Institute, Norwich, UK.ORCID http://orcid.org/0000-0002-1806-020X
Jizeng JiaChinese Academy of Agricultural Sciences (CAAS), Beijing, China.
Viktor KorzunKWS SAAT SE & Co, Einbeck, Germany.ORCID http://orcid.org/0000-0003-0760-8249
André LarocheLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.ORCID http://orcid.org/0000-0002-7778-7396
Xue-Feng MaNoble Research Institute, Ardmore, OK, USA.ORCID http://orcid.org/0000-0002-0942-9116
Frank OrdonInstitute for Resistance Research and Stress Tolerance, Julius-Kühn Institute, Quedlinburg, Germany.
Hakan ÖzkanUniversity of Cukurova, Cukurova, Turkey.ORCID http://orcid.org/0000-0003-3530-2626
Monika Rakoczy-TrojanowskaWarsaw University of Life Sciences-SGGW, Warsaw, Poland.
Uwe ScholzLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.ORCID http://orcid.org/0000-0001-6113-3518
Alan H SchulmanProduction Systems, Natural Resources Institute Finland (LUKE), Helsinki, Finland.ORCID http://orcid.org/0000-0002-4126-6177
Dörthe SiekmannHYBRO Saatzucht GmbH & Co. KG, Isernhagen, Germany.ORCID http://orcid.org/0000-0002-4885-1918
Stefan StojałowskiWest Pomeranian University of Technology Szczecin, Szczecin, Poland.
Vijay K TiwariUniversity of Maryland, College Park, MD, USA.
Manuel SpannaglPlant Genome and Systems Biology (PGSB), Helmholtz-Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0003-0701-7035
Nils SteinLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany. stein@ipk-gatersleben.de.ORCID http://orcid.org/0000-0003-3011-8731
Funding
Biotechnology and Biological Sciences Research Council BB/P016855/1
Abstract
Rye (Secale cereale L.) is an exceptionally climate-resilient cereal crop, used extensively to produce improved wheat varieties via introgressive hybridization and possessing the entire repertoire of genes necessary to enable hybrid breeding. Rye is allogamous and only recently domesticated, thus giving cultivated ryes access to a diverse and exploitable wild gene pool. To further enhance the agronomic potential of rye, we produced a chromosome-scale annotated assembly of the 7.9-gigabase rye genome and extensively validated its quality by using a suite of molecular genetic resources. We demonstrate applications of this resource with a broad range of investigations. We present findings on cultivated rye's incomplete genetic isolation from wild relatives, mechanisms of genome structural evolution, pathogen resistance, low-temperature tolerance, fertility control systems for hybrid breeding and the yield benefits of rye-wheat introgressions.
Indexed as
Genome, PlantAdaptation, PhysiologicalChromosome MappingCrops, AgriculturalGene Expression Regulation, PlantGenetic IntrogressionKaryotypePlant BreedingPlant ImmunityPlant ProteinsSecaleStress, PhysiologicalTriticumPlant Proteins
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