Evidence map›Paper›PMID 33736632›Full record

ArticleBMC medical genomics2021

Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.

Zheng Zeng, Hankui Liu, Huifang Xu, Haiying Lu, Yanyan Yu, Xiaoyuan Xu, Min Yu, Tao Zhang, Xiulan Tian, Hongli Xi and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Association of genetic polymorphisms in theFrontiers in cellular and infection microbiology · 2023
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  10. Multi-omics profiling identifies C1QA/BAnnals of translational medicine · 2022
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  11. Grainyhead-like (Grhl) Target Genes in Development and Cancer.International journal of molecular sciences · 2022
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Zheng Zeng *Department of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China. zeng@bjmu.edu.cn.ORCID 0000-0002-4997-4223
Hankui Liu *BGI-Shenzhen, Shenzhen, 518083, China.
Huifang Xu *BGI-Shenzhen, Shenzhen, 518083, China.
Haiying Lu *Department of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China.
Yanyan YuDepartment of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China.
Xiaoyuan XuDepartment of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China.
Min YuDepartment of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China.
Tao ZhangBGI-Shenzhen, Shenzhen, 518083, China.
Xiulan TianDepartment of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China.
Hongli XiDepartment of Infectious Diseases, Peking University First Hospital, Beijing, 100034, China.
Liping GuanBGI-Shenzhen, Shenzhen, 518083, China.
Jianguo ZhangBGI-Shenzhen, Shenzhen, 518083, China. zhangjg@genomics.cn.
Stephen J O'BrienLaboratory of Genomic Diversity, Center for Computer Technologies, ITMO University, St. Petersburg, Russia, 197101. lgdchief@gmail.com.
HBVstudy consortium
Peking University · CNBGI Group (China) · CNITMO University · RU

Funding

International Science and Technology Cooperation Programme 2014DFR31200National Natural Science Foundation of China 30671855National Natural Science Foundation of China 61972007Shenzhen Municipal of Government of China JCYJ20170412153248372Shenzhen Municipal of Government of China JCYJ20180507183615145
6 · The paper itself

Abstract

backgroundRecent studies have identified susceptibility genes of HBV clearance, chronic hepatitis B, liver cirrhosis, hepatocellular carcinoma, and showed the host genetic factors play an important role in these HBV-related outcomes.

methodsCollected samples from different outcomes of HBV infection and performed genotyping by Affymetrix 500 k SNP Array. GCTA tool, PLINK, and Bonferroni method were applied for analysis of genotyping and disease progression. ANOVA was used to evaluate the significance of the association between biomarkers and genotypes in healthy controls. PoMo, F

resultsThere are 1031 participants passed quality control from 1104 participants, including 275 HBV clearance, 92 asymptomatic persistence infection (ASPI), 93 chronic hepatitis B (CHB), 188 HBV-related decompensated cirrhosis (DC), 214 HBV-related hepatocellular carcinoma (HCC) and 169 healthy controls (HC). In the case-control study, one novel locus significantly associated with CHB (SNP: rs1264473, Gene: GRHL2, P = 1.57 × 10

conclusionsIn this study, we identified several novel candidate genes associated with individual HBV infectious outcomes, progressive stages, and liver enzymes. Two SNPs that show selective significance (HLA-DPA1, HLA-DPB1) in non-East Asian (European, American, South Asian) versus East Asian, indicating that host genetic factors contribute to the ethnic disparities of susceptibility of HBV infection. Taken together, these findings provided a new insight into the role of host genetic factors in HBV related outcomes and progression.

Indexed as

Disease ProgressionGenetic Predisposition to DiseaseGenome-Wide Association StudyPolymorphism, Single NucleotideAdultCarcinoma, HepatocellularCase-Control StudiesFemaleGenetic LociHepatitis BHepatitis B, ChronicHepatitis B virusHLA-DP alpha-ChainsHLA-DP beta-ChainsHumansLiver CirrhosisHLA-DPA1 antigenHLA-DP alpha-ChainsHLA-DPB1 antigenHLA-DP beta-ChainsDisease progressionGWASHBV infectionHost genetic factorsSNPs

Identifiers

PMID33736632
PMCPMC7977299
OpenAlexW3185820633

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.