Evidence map›Paper›PMID 33735607›Full record

ArticleCell2021

B cell-specific XIST complex enforces X-inactivation and restrains atypical B cells.

Bingfei Yu, Yanyan Qi, Rui Li, Quanming Shi, Ansuman T Satpathy, Howard Y Chang

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed, 1 pooled it
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 1 synthesis or guideline pooled it, 212 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Sex-dependent mechanisms in rheumatic diseases.Nature reviews. Rheumatology · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Science advances · 2026
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. RNA origin of sex-biased immunity.Molecular therapy. Nucleic acids · 2026
    Article
  16. Review
  17. Review
  18. Review
  19. Regulatory B Cells in Tumor Microenvironment.Current issues in molecular biology · 2026
    Review
  20. Review

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bingfei YuCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA.
Yanyan QiCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA.
Rui LiCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA.
Quanming ShiCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA.
Ansuman T SatpathyDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Howard Y ChangCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA. Electronic address: howchang@stanford.edu.
Stanford University · USHoward Hughes Medical Institute · US

Funding

Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI URBAN, ALEXANDER ECKEHART · 2014 to 2018
$15.2M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
Project 3: T CellsU54CA260517 · NCI · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2020 to 2024
$10.4M
Single cell epigenomics in cancer immunity and immunotherapyK08CA230188 · NCI · STANFORD UNIVERSITY · PI SATPATHY, ANSUMAN · 2018 to 2020
$448k
NCI NIH HHS K08 CA230188NCI NIH HHS U54 CA260517NHGRI NIH HHS P50 HG007735NHGRI NIH HHS RM1 HG007735
6 · The paper itself

Abstract

The long non-coding RNA (lncRNA) XIST establishes X chromosome inactivation (XCI) in female cells in early development and thereafter is thought to be largely dispensable. Here, we show XIST is continually required in adult human B cells to silence a subset of X-linked immune genes such as TLR7. XIST-dependent genes lack promoter DNA methylation and require continual XIST-dependent histone deacetylation. XIST RNA-directed proteomics and CRISPRi screen reveal distinctive somatic cell-type-specific XIST complexes and identify TRIM28 that mediates Pol II pausing at promoters of X-linked genes in B cells. Single-cell transcriptome data of female patients with either systemic lupus erythematosus or COVID-19 infection revealed XIST dysregulation, reflected by escape of XIST-dependent genes, in CD11c

Indexed as

COVID-19Lupus Erythematosus, SystemicX Chromosome InactivationB-LymphocytesCell LineDNA MethylationFemaleGene SilencingHumansRNA, Long NoncodingToll-Like Receptor 7RNA, Long NoncodingTLR7 protein, humanToll-Like Receptor 7XIST non-coding RNAchromatinepigenetic memorylong non-coding RNARNA binding proteinsex-biased immunityX chromosome inactivation

Identifiers

PMID33735607
PMCPMC9196326
OpenAlexW3138099387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.