Evidence map›Paper›PMID 33735477›Full record

ArticleThe Plant journal : for cell and molecular biology2021

The BOP-type co-transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii.

Defeng Shen, Rens Holmer, Olga Kulikova, Chanaka Mannapperuma, Nathaniel R Street, Zhichun Yan, Thomas van der Maden, Fengjiao Bu, Yuanyuan Zhang, Rene Geurts and 1 more

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Regulation of secondary growth by poplarFrontiers in plant science · 2023
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Defeng ShenLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0002-6530-8837
Rens HolmerLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0002-1080-1763
Olga KulikovaLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0002-4887-1185
Chanaka MannapperumaDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, 907 36, Sweden.ORCID 0000-0003-1589-9138
Nathaniel R StreetDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, 907 36, Sweden.ORCID 0000-0001-6031-005X
Zhichun YanLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0001-7445-6981
Thomas van der MadenLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0003-0237-4279
Fengjiao BuLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0001-7467-994X
Yuanyuan ZhangLaboratory of Plant Physiology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708 PB, The Netherlands.ORCID 0000-0001-7657-1625
Rene GeurtsLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0002-6443-2289
Kévin MagneLaboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, Wageningen, 6708PB, The Netherlands.ORCID 0000-0002-6779-5683

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tree stems undergo a massive secondary growth in which secondary xylem and phloem tissues arise from the vascular cambium. Vascular cambium activity is driven by endogenous developmental signalling cues and environmental stimuli. Current knowledge regarding the genetic regulation of cambium activity and secondary growth is still far from complete. The tropical Cannabaceae tree Parasponia andersonii is a non-legume research model of nitrogen-fixing root nodulation. Parasponia andersonii can be transformed efficiently, making it amenable for CRISPR-Cas9-mediated reverse genetics. We considered whether P. andersonii also could be used as a complementary research system to investigate tree-related traits, including secondary growth. We established a developmental map of stem secondary growth in P. andersonii plantlets. Subsequently, we showed that the expression of the co-transcriptional regulator PanNODULE ROOT1 (PanNOOT1) is essential for controlling this process. PanNOOT1 is orthologous to Arabidopsis thaliana BLADE-ON-PETIOLE1 (AtBOP1) and AtBOP2, which are involved in the meristem-to-organ-boundary maintenance. Moreover, in species forming nitrogen-fixing root nodules, NOOT1 is known to function as a key nodule identity gene. Parasponia andersonii CRISPR-Cas9 loss-of-function Pannoot1 mutants are altered in the development of the xylem and phloem tissues without apparent disturbance of the cambium organization and size. Transcriptomic analysis showed that the expression of key secondary growth-related genes is significantly down-regulated in Pannoot1 mutants. This allows us to conclude that PanNOOT1 positively contributes to the regulation of stem secondary growth. Our work also demonstrates that P. andersonii can serve as a tree research system.

Indexed as

Gene Expression Regulation, PlantCambiumCannabaceaeGene Knockout TechniquesNitrogenNitrogen FixationPhenotypePlant ProteinsPlant Root NodulationPlant RootsPlant StemsTreesNitrogenPlant ProteinsdevelopmentNOOT1NOOT-BOP-COCH-LIKE genesParasponia andersoniisecondary growthtreevascular cambium

Identifiers

PMID33735477
PMCPMC9543857

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.