Evidence map›Paper›PMID 33735228›Full record

ArticlePloS one2021

Blind deconvolution estimation by multi-exponential models and alternated least squares approximations: Free-form and sparse approach.

Daniel U Campos-Delgado, Omar Gutierrez-Navarro, Ricardo Salinas-Martinez, Elvis Duran, Aldo R Mejia-Rodriguez, Miguel J Velazquez-Duran, Javier A Jo

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Daniel U Campos-DelgadoFacultad de Ciencias, Universidad Autonoma de San Luis Potosi, San Luis Potosi, Mexico.ORCID 0000-0002-1555-0131
Omar Gutierrez-NavarroDepartment of Biomedical Engineering, Universidad Autonoma de Aguascalientes, Aguascalientes, Mexico.
Ricardo Salinas-MartinezFacultad de Ciencias, Universidad Autonoma de San Luis Potosi, San Luis Potosi, Mexico.
Elvis DuranDepartment of Biomedical Engineering, Texas A&M University, College Station, Texas, United States of America.
Aldo R Mejia-RodriguezFacultad de Ciencias, Universidad Autonoma de San Luis Potosi, San Luis Potosi, Mexico.
Miguel J Velazquez-DuranFacultad de Ciencias, Universidad Autonoma de San Luis Potosi, San Luis Potosi, Mexico.
Javier A JoSchool of Electrical and Computer Engineering, University of Oklahoma, Norman, Oklahoma, United States of America.

Funding

Endogenous fluorescence lifetime endoscopy for early detection of oral cancer and dysplasiaR01CA218739 · NCI · UNIVERSITY OF OKLAHOMA · PI JO, JAVIER ANTONIO · 2018 to 2023
$2.5M
NCI NIH HHS R01 CA218739
6 · The paper itself

Abstract

The deconvolution process is a key step for quantitative evaluation of fluorescence lifetime imaging microscopy (FLIM) samples. By this process, the fluorescence impulse responses (FluoIRs) of the sample are decoupled from the instrument response (InstR). In blind deconvolution estimation (BDE), the FluoIRs and InstR are jointly extracted from a dataset with minimal a priori information. In this work, two BDE algorithms are introduced based on linear combinations of multi-exponential functions to model each FluoIR in the sample. For both schemes, the InstR is assumed with a free-form and a sparse structure. The local perspective of the BDE methodology assumes that the characteristic parameters of the exponential functions (time constants and scaling coefficients) are estimated based on a single spatial point of the dataset. On the other hand, the same exponential functions are used in the whole dataset in the global perspective, and just the scaling coefficients are updated for each spatial point. A least squares formulation is considered for both BDE algorithms. To overcome the nonlinear interaction in the decision variables, an alternating least squares (ALS) methodology iteratively solves both estimation problems based on non-negative and constrained optimizations. The validation stage considered first synthetic datasets at different noise types and levels, and a comparison with the standard deconvolution techniques with a multi-exponential model for FLIM measurements, as well as, with two BDE methodologies in the state of the art: Laguerre basis, and exponentials library. For the experimental evaluation, fluorescent dyes and oral tissue samples were considered. Our results show that local and global perspectives are consistent with the standard deconvolution techniques, and they reached the fastest convergence responses among the BDE algorithms with the best compromise in FluoIRs and InstR estimation errors.

Indexed as

Models, ChemicalAlgorithmsDatasets as TopicFluorescent DyesHumansImage Processing, Computer-AssistedLeast-Squares AnalysisMicroscopy, FluorescenceMouth MucosaMouth NeoplasmsTime FactorsFluorescent Dyes

Identifiers

PMID33735228
PMCPMC7971520

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.