ArticleGigaScience2021
The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.
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- Resilience of genetic diversity in forest trees over the Quaternary.Nature communications · 2024Article
- Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles.Systematic biology · 2024Article
- The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.GigaScience · 2021Article
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119 authors.
Lars OpgenoorthPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Benjamin DauphinSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Raquel BenavidesLINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain.
Katrin HeerPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Paraskevi AlizotiAristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece.
Elisabet Martínez-SanchoSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Ricardo AlíaInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Olivier AmbrosioInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Albet AudreyInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Francisco AuñónInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Camilla AvanziInstitute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy.
Evangelia AvramidouAristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece.
Francesca BagnoliInstitute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy.
Evangelos BarbasAristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece.
Cristina C BastiasCentre d'Ecologie Fonctionnelle et Evolutive (CEFE), CNRS, UMR 5175, 34090, Montpellier, France.
Catherine BastienInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Dept ECOFA, 45075, Orléans, France.
Eduardo BallesterosInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Giorgia BeffaSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Frédéric BernierInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Henri BignaletInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Guillaume BodineauInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), GBFOR, 45075, Orléans, France.
Damien BouicInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Sabine BrodbeckSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
William BrunettoInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Jurata BuchovskaVytautas Magnus University, Studentu Street 11, 53361, Akademija, Lithuania.
Melanie BuyInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Ana M Cabanillas-SaldañaDepartamento de Agricultura, Ganadería y Medio Ambiente, Gobierno de Aragón, P. Mª Agustín 36, 50071, Zaragoza, Spain.
Bárbara CarvalhoLINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain.
Nicolas ChevalInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
José M ClimentInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Marianne CorreardInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Eva CremerBavarian Institute for Forest Genetics, Forstamtsplatz 1, 83317, Teisendorf, Germany.
Darius DanusevičiusVytautas Magnus University, Studentu Street 11, 53361, Akademija, Lithuania.
Fernando Del CañoInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Jean-Luc DenouInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Nicolas di GerardiSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Bernard DokhelarInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Alexis DucoussoINRAE, Univsité de Bordeaux, BIOGECO, 33770, Cestas, France.
Anne Eskild NilsenDivision of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway.
Anna-Maria FarsakoglouAristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece.
Patrick FontiSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Ioannis GanopoulosInstitute of Plant Breeding and Genetic Resources, Hellenic Agricultural Organization DEMETER (ex NAGREF), 57001, Thermi, Greece.
José M García Del BarrioInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Olivier GilgInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Santiago C González-MartínezInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
René GrafSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Alan GrayUK Centre for Ecology and Hydrology, Bush Estate Penicuik, EH26 0QB, Edinburgh, UK.
Delphine GrivetInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Felix GugerliSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Christoph HartleitnerLIECO GmbH & Co KG.
Enja HollenbachPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Agathe HurelInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Bernard IssehutInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Florence JeanInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Veronique JorgeInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), ONF, BIOFORA, 45075, Orléans, France.
Arnaud JouineauInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Jan-Philipp KappnerPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Katri KärkkäinenNatural Resources Institute Finland, Paavo Havaksentie 3, 90014, University of Oulu, Finland.
Robert KesälahtiUniversity of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland.
Florian KnutzenBavarian Institute for Forest Genetics, Forstamtsplatz 1, 83317, Teisendorf, Germany.
Sonja T KujalaNatural Resources Institute Finland, Paavo Havaksentie 3, 90014, University of Oulu, Finland.
Timo A KumpulaUniversity of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland.
Mariaceleste LabriolaInstitute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy.
Celine LalanneINRAE, Univsité de Bordeaux, BIOGECO, 33770, Cestas, France.
Johannes LambertzPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Martin LascouxDepartment of Ecology & Genetics, EBC, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden.
Vincent LejeuneInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), GBFOR, 45075, Orléans, France.
Gregoire Le-ProvostINRAE, Univsité de Bordeaux, BIOGECO, 33770, Cestas, France.
Joseph LevillainUniversité de Lorraine, AgroParisTech, INRAE, SILVA, 54000, Nancy, France.
Mirko LiesebachThünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany.
David López-QuirogaLINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain.
Benjamin MeierSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Ermioni MalliarouAristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece.
Jérémy MarchonSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Nicolas MariotteInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Antonio MasLINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain.
Silvia MatesanzÁrea de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933, Móstoles, Spain.
Helge MeischnerPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Célia MichoteyInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), URGI, Versailles, France.
Pascal MilesiDepartment of Ecology & Genetics, EBC, Science for Life Laboratory, Uppsala University, 75236, Uppsala, Sweden.
Sandro MorgantiSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Daniel NievergeltSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Eduardo NotivolCentro de Investigación y Tecnología Agroalimentaria de Aragón - Unidad de Recursos Forestales (CITA), Avda. Montañana 930, 50059, Zaragoza, Spain.
Geir OstrengDivision of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway.
Birte PakullThünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany.
Annika PerryUK Centre for Ecology and Hydrology, Bush Estate Penicuik, EH26 0QB, Edinburgh, UK.
Andrea PiottiInstitute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy.
Christophe PlomionINRAE, Univsité de Bordeaux, BIOGECO, 33770, Cestas, France.
Nicolas PoinotInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Mehdi PringarbeInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Luc PuzosInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Tanja PyhäjärviUniversity of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland.
Annie RaffinInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
José A Ramírez-ValienteInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Christian RellstabSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Dourthe RemiInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France.
Sebastian RichterPhilipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.
Juan J Robledo-ArnuncioInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Sergio San SegundoInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain.
Outi SavolainenUniversity of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland.
Silvio SchuelerAustrian Research Centre for Forests (BFW), Seckendorff-Gudent-Weg 8, 1131, Wien, Austria.
Volker SchneckThünen Institute of Forest Genetics, Eberswalder Chaussee 3a, 15377, Waldsieversdorf, Germany.
Ivan ScottiInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Vladimir SemerikovInstitute of Plant and Animal Ecology, Ural branch of RAS, 8 Marta St. 202, 620144, Ekaterinburg, Russia.
Lenka SlámováSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Jørn Henrik SønstebøDivision of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway.
Ilaria SpanuInstitute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy.
Jean ThevenetInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Mari Mette TollefsrudDivision of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway.
Norbert TurionInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Giovanni Giuseppe VendraminInstitute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy.
Marc VillarInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), ONF, BIOFORA, 45075, Orléans, France.
Georg von ArxSwiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
Johan WestinSkogforsk, Tomterna 1, 91821, Sävar, Sweden.
Bruno FadyInstitut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France.
Tor MykingDivision of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway.
Fernando ValladaresLINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain.
Filippos A AravanopoulosAristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece.
Stephen CaversUK Centre for Ecology and Hydrology, Bush Estate Penicuik, EH26 0QB, Edinburgh, UK.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundProgress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information.
findingsThe GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species' geographic ranges and reflecting local environmental gradients.
conclusionThe GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available.
Indexed as
FagusPiceaPinus sylvestrisForestsTreesbark thicknessbranch anglecrown sizeDBHforking indexfruit numberheightregenerationsoil depthstem straightness
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