Evidence map›Paper›PMID 33731925›Full record

ArticleNature2021

Identification of bacteria-derived HLA-bound peptides in melanoma.

Shelly Kalaora, Adi Nagler, Deborah Nejman, Michal Alon, Chaya Barbolin, Eilon Barnea, Steven L C Ketelaars, Kuoyuan Cheng, Kevin Vervier, Noam Shental and 43 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 276 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
276citing papers in PubMed, 2 pooled it
25.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

276 citing papers in PubMed, 2 syntheses or guidelines pooled it, 416 citations in OpenAlex.

  1. Pooled it
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  9. Imaging the hallmarks of cancer.Nature reviews. Cancer · 2026
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216 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

53 authors at 13 institutions in 6 countries.

Shelly Kalaora *Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0003-1645-4587
Adi Nagler *Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Deborah NejmanDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Michal AlonDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Chaya BarbolinDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Eilon BarneaDepartment of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Steven L C KetelaarsDivision of Molecular Oncology and Immunology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Kuoyuan ChengCancer Data Science Laboratory (CDSL), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA.
Kevin VervierWellcome Sanger Institute, Cambridge, UK.
Noam ShentalDepartment of Mathematics and Computer Science, Open University of Israel, Raanana, Israel.
Yuval BussiDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0003-0365-431X
Ron RotkopfDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0001-9503-7348
Ronen LevyDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Gil BenedekTissue Typing and Immunogenetics Unit, Hadassah Medical Center, Jerusalem, Israel.
Sophie TrabishDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Tali DadoshDepartment of Chemical Research Support, Weizmann Institute of Science, Rehovot, Israel.
Smadar Levin-ZaidmanDepartment of Chemical Research Support, Weizmann Institute of Science, Rehovot, Israel.
Leore T GellerDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Kun WangCancer Data Science Laboratory (CDSL), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA.
Polina GreenbergDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Gal YagelDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-9518-5989
Aviyah PeriDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Garold FuksDepartment of Physics of Complex Systems, Weizmann Institute of Science, Rehovot, Israel.
Neerupma BhardwajThe Ruth and Bruce Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel.
Alexandre ReubenDepartment of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0003-4510-0382
Leandro HermidaCancer Data Science Laboratory (CDSL), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-3887-518X
Sarah B JohnsonDepartment of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Jessica R Galloway-PeñaDepartment of Veterinary Pathobiology, Texas A&M University, Houston, TX, USA.
William C ShropshireDepartment of Infectious Diseases, MD Anderson Cancer Center, Houston, TX, USA.
Chantale BernatchezDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Cara HaymakerDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0002-1317-9287
Reetakshi AroraDepartment of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Lior RoitmanDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Raya EilamDepartment of Veterinary Resources, Weizmann Institute of Science, Rehovot, Israel.
Adina WeinbergerDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Maya Lotan-PompanDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Michal LotemSharett Institute of Oncology, Hadassah Hebrew University Medical Center, Jerusalem, Israel.
Arie AdmonDepartment of Biology, Technion - Israel Institute of Technology, Haifa, Israel.ORCID http://orcid.org/0000-0003-0504-3950
Yishai LevinThe de Botton Institute for Protein Profiling, The Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel.
Trevor D LawleyWellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0002-4805-621X
David J AdamsWellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0001-9490-0306
Mitchell P LevesqueFaculty of Medicine, University of Zurich Hospital, University of Zurich, Zurich, Switzerland.
Michal J BesserThe Ella Lemelbaum Institute for Immuno Oncology and Melanoma, Chaim Sheba Medical Center, Tel Hashomer, Israel.
Jacob SchachterThe Ella Lemelbaum Institute for Immuno Oncology and Melanoma, Chaim Sheba Medical Center, Tel Hashomer, Israel.
Ofra GolaniDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-9793-236X
Eran SegalDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-6859-1164
Naama Geva-ZatorskyThe Ruth and Bruce Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel.ORCID http://orcid.org/0000-0002-7303-854X
Eytan RuppinCancer Data Science Laboratory (CDSL), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-7862-3940
Pia KvistborgDivision of Molecular Oncology and Immunology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-4988-608X
Scott N PetersonSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Jennifer A WargoDepartment of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0003-3438-7576
Ravid StraussmanDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-9476-329X
Yardena SamuelsDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel. yardena.samuels@weizmann.ac.il.ORCID http://orcid.org/0000-0002-3349-7266
Weizmann Institute of Science · ILThe University of Texas MD Anderson Cancer Center · USNational Institutes of Health · USTechnion – Israel Institute of Technology · ILWellcome Sanger Institute · GBHadassah Medical Center · ILTel Aviv University · ILThe Netherlands Cancer Institute · NLCanadian Institute for Advanced Research · CAOpen University of Israel · ILSanford Burnham Prebys Medical Discovery Institute · USTexas A&M University · USUniversity of Zurich · CH

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Computational studies of cancer immunotherapyZIABC011803 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RUPPIN, EYTAN · 2018 to 2025
$10.7M
Identifying Risk Factors for Antibiotic Resistance via Integration of Epidemiology and MetagenomicsK01AI143881 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GALLOWAY-PENA, JESSICA RHEA · 2019 to 2023
$545k
European Research CouncilIntramural NIH HHSMedical Research Council MR/V000292/1NCI NIH HHS P30 CA016672NIAID NIH HHS K01 AI143881Wellcome Trust WT098051
6 · The paper itself

Abstract

A variety of species of bacteria are known to colonize human tumours

Indexed as

Antigen PresentationAntigens, BacterialBacteriaCell Line, TumorCoculture TechniquesHLA AntigensHumansLymphocytes, Tumor-InfiltratingMelanomaNeoplasm MetastasisPeptidesPhylogenyRNA, Ribosomal, 16SAntigens, BacterialHLA AntigensPeptidesRNA, Ribosomal, 16S

Identifiers

PMID33731925
PMCPMC9717498
OpenAlexW3137683977

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.