Evidence map›Paper›PMID 33731715›Full record

ArticleNature communications2021

Control of a programmed cell death pathway in Pseudomonas aeruginosa by an antiterminator.

Jennifer M Peña, Samantha M Prezioso, Kirsty A McFarland, Tracy K Kambara, Kathryn M Ramsey, Padraig Deighan, Simon L Dove

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

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  8. Global transcriptional response of Pseudomonas aeruginosa to UVA radiation.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
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  11. The emergence of cefiderocol resistance inAntimicrobial agents and chemotherapy · 2024
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  17. ECF Sigma Factor HxuI Is Critical forMicrobiology spectrum · 2022
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  18. Sending out an SOS - the bacterial DNA damage response.Genetics and molecular biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jennifer M PeñaDivision of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Samantha M Prezioso *Division of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Kirsty A McFarland *Division of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Tracy K KambaraDivision of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Kathryn M RamseyDivision of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-9014-4416
Padraig DeighanDepartment of Biology, Emmanuel College, Boston, MA, USA.
Simon L DoveDivision of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA. simon.dove@childrens.harvard.edu.ORCID 0000-0002-3758-608X
Boston Children's Hospital · USEmmanuel College - Massachusetts · US

Funding

Programmed cell death in P. aeruginosaR01AI118955 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI DOVE, SIMON L · 2016 to 2020
$2.7M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI118955
6 · The paper itself

Abstract

In Pseudomonas aeruginosa the alp system encodes a programmed cell death pathway that is switched on in a subset of cells in response to DNA damage and is linked to the virulence of the organism. Here we show that the central regulator of this pathway, AlpA, exerts its effects by acting as an antiterminator rather than a transcription activator. In particular, we present evidence that AlpA positively regulates the alpBCDE cell lysis genes, as well as genes in a second newly identified target locus, by recognizing specific DNA sites within the promoter, then binding RNA polymerase directly and allowing it to bypass intrinsic terminators positioned downstream. AlpA thus functions in a mechanistically unusual manner to control the expression of virulence genes in this opportunistic pathogen.

Indexed as

ApoptosisBacterial ProteinsBacteriolysisBinding SitesDNA DamageDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialGuanosine TetraphosphateOperonPromoter Regions, GeneticProtein BindingPseudomonas aeruginosaTerminator Regions, GeneticTranscription, GeneticVirulenceBacterial ProteinsDNA-Directed RNA PolymerasesGuanosine Tetraphosphate

Identifiers

PMID33731715
PMCPMC7969949
OpenAlexW3137959875

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.