Evidence map›Paper›PMID 33731109›Full record

ArticleMicrobial cell factories2021

Comprehensive transcriptomic and proteomic analyses identify intracellular targets for myriocin to induce Fusarium oxysporum f. sp. niveum cell death.

Hengxu Wang, Zhigang Wang, Weihui Xu, Kexin Wang

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Linalool combatseLife · 2025
    Article
  3. Article
  4. The Extracellular Lipopeptides and Volatile Organic Compounds ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Suppression of Fusarium Wilt in Watermelon byJournal of fungi (Basel, Switzerland) · 2023
    Article
  6. AntimicrobialAntibiotics (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hengxu WangCollege of Life Science and Agroforestry, Qiqihar University, Qiqihar, 161006, China.
Zhigang WangCollege of Life Science and Agroforestry, Qiqihar University, Qiqihar, 161006, China.
Weihui XuCollege of Life Science and Agroforestry, Qiqihar University, Qiqihar, 161006, China. xwh800206@163.com.ORCID http://orcid.org/0000-0002-8300-3121
Kexin WangCollege of Life Science and Agroforestry, Qiqihar University, Qiqihar, 161006, China.
Qiqihar University · CN

Funding

the Graduate Innovation Project of Qiqihar University YJSCX2020047the Joint Guiding Project of Natural Science Foundation in Heilongjiang Province, China LH2019C068the National Natural Science Foundation of China 31700428the Scientific Research Program at Qiqihar University, China 135509804
6 · The paper itself

Abstract

backgroundMyriocin is a natural product with antifungal activity and is derived from Bacillus amyloliquefaciens LZN01. Our previous work demonstrated that myriocin can inhibit the growth of Fusarium oxysporum f. sp. niveum (Fon) by inducing membrane damage. In this study, the antifungal actions of myriocin against Fon were investigated with a focus on the effects of myriocin on intracellular molecules.

resultsAnalysis of DNA binding and fluorescence spectra demonstrated that myriocin can interact with dsDNA from Fon cells. The intracellular-targeted mechanism of action was also supported by transcriptomic and proteomic analyses; a total of 2238 common differentially expressed genes (DEGs) were identified. The DEGs were further verified by RT-qPCR. Most of the DEGs were assigned metabolism and genetic information processing functions and were enriched in ribosome biogenesis in eukaryotes pathway. The expression of some genes and proteins in ribosome biogenesis in eukaryotes pathway was affected by myriocin, primarily the genes controlled by the C6 zinc cluster transcription factor family and the NFYA transcription factor. Myriocin influenced the posttranscriptional processing of gene products by triggering the main RI (retained intron) events of novel alternative splicing; myriocin targeted key genes (FOXG_09470) or proteins (RIOK2) in ribosome biogenesis in eukaryotes pathway, resulting in disordered translation.

conclusionsIn conclusion, myriocin was determined to exhibit activity against Fon by targeting intracellular molecules. The results of our study may help to elucidate the antifungal actions of myriocin against Fon.

Indexed as

TranscriptomeAlternative SplicingAntifungal AgentsDNA, FungalFatty Acids, MonounsaturatedFungal ProteinsFusariumGene Expression Regulation, FungalGenes, FungalMolecular Docking SimulationMolecular Sequence AnnotationProteomicsRibosomesTranscription FactorsAntifungal AgentsDNA, FungalFatty Acids, MonounsaturatedFungal ProteinsthermozymocidinTranscription FactorsExpression of genes and proteinsFusarium oxysporum f. sp. niveumIntracellular moleculesMyriocinTranscriptomic and proteomic

Identifiers

PMID33731109
PMCPMC7968361
OpenAlexW3137329994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.