Evidence map›Paper›PMID 33731010›Full record

ArticleGenetics, selection, evolution : GSE2021

Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs.

Fany Blanc, Tatiana Maroilley, Manuel Revilla, Gaëtan Lemonnier, Jean-Jacques Leplat, Yvon Billon, Laure Ravon, Olivier Bouchez, Jean-Pierre Bidanel, Bertrand Bed'Hom and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genetics, selection, evolution : GSE, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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  8. Pyroptosis, metabolism, and tumor immune microenvironment.Clinical and translational medicine · 2021
    Review
  9. Discovery of Predictors ofMicroorganisms · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Fany BlancUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France. fany.blanc@inrae.fr.ORCID https://orcid.org/0000-0003-2366-9826
Tatiana MaroilleyUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0002-3392-5363
Manuel RevillaUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0002-0164-9317
Gaëtan LemonnierUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.
Jean-Jacques LeplatUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.
Yvon BillonINRAE, GenESI, 17700, Surgères, France.
Laure RavonINRAE, GenESI, 17700, Surgères, France.
Olivier BouchezINRAE, GeT-PlaGe, Genotoul, 31326, Castanet-Tolosan, France.
Jean-Pierre BidanelUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0001-9290-9550
Bertrand Bed'HomUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0002-0825-0886
Marie-Hélène Pinard-van der LaanUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0003-4992-8726
Jordi EstelléUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0002-6241-1732
Claire Rogel-GaillardUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France. claire.rogel-gaillard@inrae.fr.ORCID http://orcid.org/0000-0002-2174-1962
AgroParisTech · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

Horizon 2020 Grant Agreement n°633184
6 · The paper itself

Abstract

backgroundThe impact of individual genetic and genomic variations on immune responses is an emerging lever investigated in vaccination strategies. In our study, we used genetic and pre-vaccination blood transcriptomic data to study vaccine effectiveness in pigs.

resultsA cohort of 182 Large White pigs was vaccinated against Mycoplasma hyopneumoniae (M. hyo) at weaning (28 days of age), with a booster 21 days later. Vaccine response was assessed by measuring seric M. hyo antibodies (Ab) at 0 (vaccination day), 21 (booster day), 28, 35, and 118 days post-vaccination (dpv). Inter-individual variability of M. hyo Ab levels was observed at all time points and the corresponding heritabilities ranged from 0.46 to 0.57. Ab persistence was higher in females than in males. Genome-wide association studies with a 658 K SNP panel revealed two genomic regions associated with variations of M. hyo Ab levels at 21 dpv at positions where immunity-related genes have been mapped, DAB2IP on chromosome 1, and ASAP1, CYRIB and GSDMC on chromosome 4. We studied covariations of Ab responses with the pre-vaccination blood transcriptome obtained by RNA-Seq for a subset of 82 pigs. Weighted gene correlation network and differential expression analyses between pigs that differed in Ab responses highlighted biological functions that were enriched in heme biosynthesis and platelet activation for low response at 21 dpv, innate antiviral immunity and dendritic cells for high response at 28 and 35 dpv, and cell adhesion and extracellular matrix for high response at 118 dpv. Sparse partial least squares discriminant analysis identified 101 genes that efficiently predicted divergent responders at all time points. We found weak negative correlations of M. hyo Ab levels with body weight traits, which revealed a trade-off that needs to be further explored.

conclusionsWe confirmed the influence of the host genetics on vaccine effectiveness to M. hyo and provided evidence that the pre-vaccination blood transcriptome co-varies with the Ab response. Our results highlight that both genetic markers and blood biomarkers could be used as potential predictors of vaccine response levels and more studies are required to assess whether they can be exploited in breeding programs.

Indexed as

Immunogenicity, VaccinePolymorphism, Single NucleotideTranscriptomeAnimalsAntibodiesFemaleHemeImmunity, InnateMaleMycoplasma hyopneumoniaePlatelet ActivationPneumonia of Swine, MycoplasmalSwineVaccinationAntibodiesHeme

Identifiers

PMID33731010
PMCPMC7972226
OpenAlexW3136167624

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.