Evidence map›Paper›PMID 33729153›Full record

ArticleeLife2021

Action detection using a neural network elucidates the genetics of mouse grooming behavior.

Brian Q Geuther, Asaf Peer, Hao He, Gautam Sabnis, Vivek M Philip, Vivek Kumar

Abstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  15. Visual detection of seizures in mice using supervised machine learning.bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. NAPS: Integrating pose estimation and tag-based tracking.Methods in ecology and evolution · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Brian Q GeutherThe Jackson Laboratory, Bar Harbor, United States.ORCID 0000-0002-7822-486X
Asaf PeerThe Jackson Laboratory, Bar Harbor, United States.ORCID 0000-0002-7577-353X
Hao HeThe Jackson Laboratory, Bar Harbor, United States.
Gautam SabnisThe Jackson Laboratory, Bar Harbor, United States.
Vivek M PhilipThe Jackson Laboratory, Bar Harbor, United States.
Vivek KumarThe Jackson Laboratory, Bar Harbor, United States.ORCID 0000-0001-6643-7465

Funding

Establishment and Characterization of Novel Mutant Mouse Models for the Addiction Research CommunityU01DA051235 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2021 to 2025
$4.2M
Sequencing Mutant Mice With Altered Cocaine ResponsesU01DA041668 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2016 to 2020
$2.8M
Application of Machine Vision to Determine the Influence of Sleep States and Social Interactions on Vulnerability to Drug AddictionR21DA048634 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2019 to 2020
$468k
NIDA NIH HHS R21 DA048634NIDA NIH HHS U01 DA041668NIDA NIH HHS U01 DA051235NIH HHS DA041668NIH HHS DA048634
6 · The paper itself

Abstract

Automated detection of complex animal behaviors remains a challenging problem in neuroscience, particularly for behaviors that consist of disparate sequential motions. Grooming is a prototypical stereotyped behavior that is often used as an endophenotype in psychiatric genetics. Here, we used mouse grooming behavior as an example and developed a general purpose neural network architecture capable of dynamic action detection at human observer-level performance and operating across dozens of mouse strains with high visual diversity. We provide insights into the amount of human annotated training data that are needed to achieve such performance. We surveyed grooming behavior in the open field in 2457 mice across 62 strains, determined its heritable components, conducted GWAS to outline its genetic architecture, and performed PheWAS to link human psychiatric traits through shared underlying genetics. Our general machine learning solution that automatically classifies complex behaviors in large datasets will facilitate systematic studies of behavioral mechanisms.

Indexed as

Behavior, AnimalGroomingMachine LearningNeural Networks, ComputerAnimalsEthologyFemaleMaleMiceMice, Inbred C57BLaction detectioncomputational biologygroomingGWASmachine learningmouseneural networkneurosciencesystems biology

Identifiers

PMID33729153
PMCPMC8043749

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.