Evidence map›Paper›PMID 33728464›Full record

ArticleBlood2021

Single-cell analysis can define distinct evolution of tumor sites in follicular lymphoma.

Sarah Haebe, Tanaya Shree, Anuja Sathe, Grady Day, Debra K Czerwinski, Susan M Grimes, HoJoon Lee, Michael S Binkley, Steven R Long, Brock Martin and 2 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Blood, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 89 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. The POD24 challenge: where do we go from here for early progressors?Hematology. American Society of Hematology. Education Program · 2024
    Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Sarah HaebeDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0002-6813-5476
Tanaya ShreeDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0003-0694-3512
Anuja SatheDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0002-2100-0013
Grady DayDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0001-9150-1182
Debra K CzerwinskiDivision of Oncology, Department of Medicine, School of Medicine.
Susan M GrimesStanford Genome Technology Center.
HoJoon LeeDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0002-0973-9544
Michael S BinkleyDepartment of Radiation Oncology, School of Medicine, and.ORCID 0000-0002-2640-5255
Steven R LongDepartment of Pathology, School of Medicine, Stanford University, Stanford, CA.
Brock MartinDepartment of Pathology, School of Medicine, Stanford University, Stanford, CA.ORCID 0000-0001-8539-9556
Hanlee P JiDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0003-3772-3424
Ronald LevyDivision of Oncology, Department of Medicine, School of Medicine.ORCID 0000-0003-2061-0650
New York Genome Center · USStanford University · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI HOWE, ROGER THOMAS, JI, HANLEE P · 1990 to 2016
$120.9M
Enhancing Cancer Immunotherapy: Targeting the Tumor and Targeting the HostR35CA197353 · NCI · STANFORD UNIVERSITY · PI LEVY, RONALD · 2016 to 2022
$6.1M
Systematic discovery of neomorph protein-protein interactions in cancer for oncogenic pathway perturbationU01CA217875 · NCI · EMORY UNIVERSITY · PI FU, HAIAN · 2017 to 2021
$4.5M
Statistical Models for Genome Sequencing and AssociationR01HG006137 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JI, HANLEE P, ZHANG, NANCY R · 2011 to 2022
$4.3M
Program in Translational and Experimental HematologyT32HL120824 · NHLBI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2023
$2.4M
Dynamic Analysis of Tumor and Microenvironment in Patients Undergoing ImmunotherapyK08CA252637 · NCI · STANFORD UNIVERSITY · PI SHREE, TANAYA · 2020 to 2024
$947k
NCI NIH HHS K08 CA252637NCI NIH HHS R35 CA197353NCI NIH HHS U01 CA217875NHGRI NIH HHS P01 HG000205NHGRI NIH HHS R01 HG006137NHLBI NIH HHS T32 HL120824
6 · The paper itself

Abstract

Tumor heterogeneity complicates biomarker development and fosters drug resistance in solid malignancies. In lymphoma, our knowledge of site-to-site heterogeneity and its clinical implications is still limited. Here, we profiled 2 nodal, synchronously acquired tumor samples from 10 patients with follicular lymphoma (FL) using single-cell RNA, B-cell receptor (BCR) and T-cell receptor sequencing, and flow cytometry. By following the rapidly mutating tumor immunoglobulin genes, we discovered that BCR subclones were shared between the 2 tumor sites in some patients, but in many patients, the disease had evolved separately with limited tumor cell migration between the sites. Patients exhibiting divergent BCR evolution also exhibited divergent tumor gene-expression and cell-surface protein profiles. While the overall composition of the tumor microenvironment did not differ significantly between sites, we did detect a specific correlation between site-to-site tumor heterogeneity and T follicular helper (Tfh) cell abundance. We further observed enrichment of particular ligand-receptor pairs between tumor and Tfh cells, including CD40 and CD40LG, and a significant correlation between tumor CD40 expression and Tfh proliferation. Our study may explain discordant responses to systemic therapies, underscores the difficulty of capturing a patient's disease with a single biopsy, and furthers our understanding of tumor-immune networks in FL.

Indexed as

Single-Cell AnalysisAdultAgedAntigens, NeoplasmBiopsy, Fine-NeedleCD40 AntigensCD40 LigandClonal EvolutionDisease ProgressionDNA, NeoplasmFemaleFlow CytometryGene Rearrangement, B-Lymphocyte, Light ChainGene Rearrangement, T-LymphocyteHumansLymph NodesAntigens, NeoplasmCD40 AntigensCD40 LigandDNA, NeoplasmNeoplasm ProteinsRNA, Neoplasm

Identifiers

PMID33728464
PMCPMC8160505
OpenAlexW3138983672

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.