Evidence map›Paper›PMID 33727571›Full record

ArticleScientific reports2021

Genomics and Transcriptomics of the green mussel explain the durability of its byssus.

Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  7. Microbiota characterization of the green musselFrontiers in microbiology · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot.Computational and structural biotechnology journal · 2022
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Koji InoueAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan. inouek@aori.u-tokyo.ac.jp.
Yuki YoshiokaAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan.
Hiroyuki TanakaDepartment of Biological Information, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan.
Azusa KinjoAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan.
Mieko SassaAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan.
Ikuo UedaSchool of Marine Biosciences, Kitasato University, Kanagawa, 252-0373, Japan.
Chuya ShinzatoAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan.
Atsushi ToyodaComparative Genomics Laboratory, National Institute of Genetics, Mishima, 411-8540, Japan.
Takehiko ItohDepartment of Biological Information, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mussels, which occupy important positions in marine ecosystems, attach tightly to underwater substrates using a proteinaceous holdfast known as the byssus, which is tough, durable, and resistant to enzymatic degradation. Although various byssal proteins have been identified, the mechanisms by which it achieves such durability are unknown. Here we report comprehensive identification of genes involved in byssus formation through whole-genome and foot-specific transcriptomic analyses of the green mussel, Perna viridis. Interestingly, proteins encoded by highly expressed genes include proteinase inhibitors and defense proteins, including lysozyme and lectins, in addition to structural proteins and protein modification enzymes that probably catalyze polymerization and insolubilization. This assemblage of structural and protective molecules constitutes a multi-pronged strategy to render the byssus highly resistant to environmental insults.

Indexed as

Gene Expression ProfilingGenomicsAnimalsComputational BiologyGene Expression RegulationGenomeHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPernaPhylogenyProteinsTranscriptomeProteins

Identifiers

PMID33727571
PMCPMC7971044

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.