Evidence map›Paper›PMID 33727422›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Crystal structure of a far-red-sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism.

Sepalika Bandara, Nathan C Rockwell, Xiaoli Zeng, Zhong Ren, Cong Wang, Heewhan Shin, Shelley S Martin, Marcus V Moreno, J Clark Lagarias, Xiaojing Yang

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  11. Light- and pH-dependent structural changes in cyanobacteriochrome AnPixJg2.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  12. Structural basis of bilin binding by the chlorophyll biosynthesis regulator GUN4.Protein science : a publication of the Protein Society · 2021
    Article
  13. Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Red Light Optogenetics in Neuroscience.Frontiers in cellular neuroscience · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Sepalika BandaraDepartment of Chemistry, University of Illinois, Chicago, IL 60607.
Nathan C RockwellDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616.ORCID 0000-0002-7748-7019
Xiaoli ZengDepartment of Chemistry, University of Illinois, Chicago, IL 60607.
Zhong RenDepartment of Chemistry, University of Illinois, Chicago, IL 60607.ORCID 0000-0001-7098-3127
Cong WangDepartment of Chemistry, University of Illinois, Chicago, IL 60607.
Heewhan ShinDepartment of Chemistry, University of Illinois, Chicago, IL 60607.
Shelley S MartinDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616.
Marcus V MorenoDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616.ORCID 0000-0002-2201-8792
J Clark LagariasDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616; jclagarias@ucdavis.edu xiaojing@uic.edu.ORCID 0000-0002-2093-0403
Xiaojing YangDepartment of Chemistry, University of Illinois, Chicago, IL 60607; jclagarias@ucdavis.edu xiaojing@uic.edu.ORCID 0000-0003-1394-9189
University of Illinois Chicago · USUniversity of California, Davis · US

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
Electric Field-stimulated Protein MechanicsP41GM118217 · NIGMS · UNIVERSITY OF CHICAGO · PI RANGANATHAN, RAMA · 2019 to 2021
$5.3M
Structures, Dynamics and Signaling Mechanisms of Modular PhotoreceptorsR01EY024363 · NEI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI YANG, XIAOJING · 2014 to 2021
$2.9M
NEI NIH HHS R01 EY024363NIGMS NIH HHS P41 GM118217NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

Cyanobacteriochromes (CBCRs) are small, linear tetrapyrrole (bilin)-binding photoreceptors in the phytochrome superfamily that regulate diverse light-mediated adaptive processes in cyanobacteria. More spectrally diverse than canonical red/far-red-sensing phytochromes, CBCRs were thought to be restricted to sensing visible and near UV light until recently when several subfamilies with far-red-sensing representatives (frCBCRs) were discovered. Two of these frCBCRs subfamilies have been shown to incorporate bilin precursors with larger pi-conjugated chromophores, while the third frCBCR subfamily uses the same phycocyanobilin precursor found in the bulk of the known CBCRs. To elucidate the molecular basis of far-red light perception by this third frCBCR subfamily, we determined the crystal structure of the far-red-absorbing dark state of one such frCBCR Anacy_2551g3 from

Indexed as

Models, MolecularProtein ConformationBile PigmentsCyanobacteriaLightOptogeneticsPhytochromeStructure-Activity RelationshipUltraviolet RaysBile PigmentsPhytochromebilin-based photoreceptorbilin tautomersfar-red-light sensingoptogeneticsserial crystallography

Identifiers

PMID33727422
PMCPMC8000052
OpenAlexW3137609128

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.