Evidence map›Paper›PMID 33727252›Full record

ArticleScience (New York, N.Y.)2021

Structural impact on SARS-CoV-2 spike protein by D614G substitution.

Jun Zhang, Yongfei Cai, Tianshu Xiao, Jianming Lu, Hanqin Peng, Sarah M Sterling, Richard M Walsh, Sophia Rits-Volloch, Haisun Zhu, Alec N Woosley and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 295 papers.

0numbers the graph read from it
0cells of the map it votes in
295citing papers in PubMed
27.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

295 citing papers in PubMed, 467 citations in OpenAlex.

  1. Trial
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  6. Nanobodies targeting SARS-CoV-2 variants.Acta pharmaceutica Sinica. B · 2026
    Review
  7. Article
  8. Article
  9. D614G reshapes allosteric networks and opening mechanisms of SARS-CoV-2 spikes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  20. Review

235 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Jun Zhang *Division of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0002-1289-0624
Yongfei Cai *Division of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0002-3628-3802
Tianshu XiaoDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0003-1287-1228
Jianming LuCodex BioSolutions, Inc., Gaithersburg, MD 20879, USA.
Hanqin PengDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0002-5357-8215
Sarah M SterlingThe Harvard Cryo-EM Center for Structural Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0003-0017-0408
Richard M WalshThe Harvard Cryo-EM Center for Structural Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0002-8939-8988
Sophia Rits-VollochDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Haisun ZhuInstitute for Protein Innovation, Harvard Institutes of Medicine, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0001-8395-9409
Alec N WoosleyInstitute for Protein Innovation, Harvard Institutes of Medicine, Boston, MA 02115, USA.
Wei YangInstitute for Protein Innovation, Harvard Institutes of Medicine, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0002-7634-6601
Piotr SlizDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.ORCID https://orcid.org/0000-0002-6522-0835
Bing ChenDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA. bchen@crystal.harvard.edu.ORCID https://orcid.org/0000-0002-8625-1657
Boston Children's Hospital · USInstitute for Protein Innovation · USHarvard University · USCodex Biosolutions (United States) · US

Funding

Structure-function studies of the membrane-interacting domains of HIV-1 Env spikeR01AI127193 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING, HARRISON, STEPHEN COPLAN · 2016 to 2025
$8.4M
Structure of the full-length spike protein of SARS-CoV-2 in the context of membraneR01AI147884 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING · 2020 to 2024
$3.4M
Structural Basis of Coreceptor Recognition by HIV-1 Envelope SpikeR01AI141002 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING · 2018 to 2022
$2.6M
NIAID NIH HHS R01 AI127193NIAID NIH HHS R01 AI141002NIAID NIH HHS R01 AI147884
6 · The paper itself

Abstract

Substitution for aspartic acid (D) by glycine (G) at position 614 in the spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) appears to facilitate rapid viral spread. The G614 strain and its recent variants are now the dominant circulating forms. Here, we report cryo-electron microscopy structures of a full-length G614 S trimer, which adopts three distinct prefusion conformations that differ primarily by the position of one receptor-binding domain. A loop disordered in the D614 S trimer wedges between domains within a protomer in the G614 spike. This added interaction appears to prevent premature dissociation of the G614 trimer-effectively increasing the number of functional spikes and enhancing infectivity-and to modulate structural rearrangements for membrane fusion. These findings extend our understanding of viral entry and suggest an improved immunogen for vaccine development.

Indexed as

Amino Acid SubstitutionAngiotensin-Converting Enzyme 2Antibodies, ViralCOVID-19Cryoelectron MicroscopyHumansHydrophobic and Hydrophilic InteractionsModels, MolecularMutant ProteinsProtein BindingProtein ConformationProtein DomainsProtein SubunitsReceptors, CoronavirusSARS-CoV-2Spike Glycoprotein, CoronavirusACE2 protein, humanAngiotensin-Converting Enzyme 2Antibodies, ViralMutant ProteinsProtein SubunitsReceptors, CoronavirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID33727252
PMCPMC8139424
OpenAlexW3137409463

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.