Evidence map›Paper›PMID 33726681›Full record

ArticleBMC plant biology2021

Knockout of the entire family of AITR genes in Arabidopsis leads to enhanced drought and salinity tolerance without fitness costs.

Siyu Chen, Na Zhang, Ganghua Zhou, Saddam Hussain, Sajjad Ahmed, Hainan Tian, Shucai Wang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.

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  18. Plants (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Siyu ChenLaboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, 276000, Linyi, China.
Na ZhangKey Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, 130024, Changchun, China.
Ganghua ZhouKey Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, 130024, Changchun, China.
Saddam HussainKey Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, 130024, Changchun, China.
Sajjad AhmedKey Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, 130024, Changchun, China.
Hainan TianKey Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, 130024, Changchun, China. tianhainan2012@126.com.
Shucai WangLaboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, 276000, Linyi, China. wangshucai@yahoo.com.ORCID http://orcid.org/0000-0001-7619-2385
Northeast Normal University · CNLinyi University · CN

Funding

Linyi University LYDX2019BS039National Key R&D Program of China 2016YFD0101900National Natural Science Foundation of China 32071938
6 · The paper itself

Abstract

backgorundEnvironmental stresses including abiotic stresses and biotic stresses limit yield of plants. Stress-tolerant breeding is an efficient way to improve plant yield under stress conditions. Genome editing by CRISPR/Cas9 can be used in molecular breeding to improve agronomic traits in crops, but in most cases, with fitness costs. The plant hormone ABA regulates plant responses to abiotic stresses via signaling transduction. We previously identified AITRs as a family of novel transcription factors that play a role in regulating plant responses to ABA and abiotic stresses. We found that abiotic stress tolerance was increased in the single, double and triple aitr mutants. However, it is unclear if the increased abiotic stress tolerance in the mutants may have fitness costs.

resultsWe report here the characterization of AITRs as suitable candidate genes for CRISPR/Cas9 editing to improve plant stress tolerance. By using CRISPR/Cas9 to target AITR3 and AITR4 simultaneously in the aitr256 triple and aitr1256 quadruple mutants respectively, we generated Cas9-free aitr23456 quintuple and aitr123456 sextuple mutants. We found that reduced sensitivities to ABA and enhanced tolerance to drought and salt were observed in these mutants. Most importantly, plant growth and development was not affected even in the aitr123456 sextuple mutants, in whom the entire AITR family genes have been knocked out, and the aitr123456 sextuple mutants also showed a wild type response to the pathogen infection.

conclusionsOur results suggest that knockout of the AITR family genes in Arabidopsis enhanced abiotic stress tolerance without fitness costs. Considering that knock-out a few AITRs will lead to enhanced abiotic stress tolerance, that AITRs are widely distributed in angiosperms with multiple encoding genes, AITRs may be targeted for molecular breeding to improve abiotic stress tolerance in plants including crops.

Indexed as

Gene SilencingArabidopsisArabidopsis ProteinsDroughtsGene Expression Regulation, PlantGenes, PlantPlant BreedingSalinitySalt ToleranceStress, PhysiologicalTranscription FactorsArabidopsis ProteinsTranscription FactorsABAAbiotic stressAITRsArabidopsisFitness costGene editing

Identifiers

PMID33726681
PMCPMC7967987
OpenAlexW3138213310

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.