Evidence map›Paper›PMID 33725183›Full record

ArticlePlant reproduction2021

Deep learning-based high-throughput phenotyping can drive future discoveries in plant reproductive biology.

Cedar Warman, John E Fowler

Abstract read
In one paragraph

Article in Plant reproduction, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Deep learning in plant phenotyping: the first ten years.Plant phenomics (Washington, D.C.) · 2025
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Cedar WarmanDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA. cedardalewarman@gmail.com.ORCID http://orcid.org/0000-0002-6760-1869
John E FowlerDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.ORCID http://orcid.org/0000-0002-9254-5934

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageAdvances in deep learning are providing a powerful set of image analysis tools that are readily accessible for high-throughput phenotyping applications in plant reproductive biology. High-throughput phenotyping systems are becoming critical for answering biological questions on a large scale. These systems have historically relied on traditional computer vision techniques. However, neural networks and specifically deep learning are rapidly becoming more powerful and easier to implement. Here, we examine how deep learning can drive phenotyping systems and be used to answer fundamental questions in reproductive biology. We describe previous applications of deep learning in the plant sciences, provide general recommendations for applying these methods to the study of plant reproduction, and present a case study in maize ear phenotyping. Finally, we highlight several examples where deep learning has enabled research that was previously out of reach and discuss the future outlook of these methods.

Indexed as

Deep LearningBiologyImage Processing, Computer-AssistedNeural Networks, ComputerPlantsComputer visionDeep learningNeural networkPhenotypingReproduction

Identifiers

PMID33725183
PMCPMC8128740

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.