Evidence map›Paper›PMID 33724365›Full record

ArticleThe Journal of experimental medicine2021

Germline SAMD9L truncation variants trigger global translational repression.

Eric J Allenspach, Frank Soveg, Laura S Finn, Lomon So, Jacquelyn A Gorman, Aaron B I Rosen, Suzanne Skoda-Smith, Marsha M Wheeler, Kaitlyn A Barrow, Lucille M Rich and 6 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Sticky, Adaptable, and Many-sided: SAM protein versatility in normal and pathological hematopoietic states.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Review
  18. Article
  19. Functional Study of SAMD9L in Familial Gastric Cancer.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Eric J AllenspachCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
Frank SovegDepartment of Immunology, University of Washington, Seattle, WA.
Laura S FinnDepartment of Pathology and Laboratory Medicine, University of Washington, Seattle, WA.
Lomon SoDepartment of Immunology, University of Washington, Seattle, WA.
Jacquelyn A GormanCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
Aaron B I RosenCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
Suzanne Skoda-SmithDepartment of Pediatrics, University of Washington, Seattle, WA.
Marsha M WheelerGenome Sciences, University of Washington, Seattle, WA.
Kaitlyn A BarrowCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
Lucille M RichCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
Jason S DebleyCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
Michael J BamshadDepartment of Pediatrics, University of Washington, Seattle, WA.
Deborah A NickersonGenome Sciences, University of Washington, Seattle, WA.
Ram SavanDepartment of Immunology, University of Washington, Seattle, WA.
Troy R Torgerson *Allen Institute for Immunology, Seattle, WA.
David J Rawlings *Center for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA.
University of Washington · USSeattle Children's Hospital · USAllen Institute for Immunology · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
The Role of the Adaptor Protein SH2B3 in Type 1 DiabetesK08DK114568 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI ALLENSPACH, ERIC J · 2018 to 2022
$810k
HiSeq X SequencerS10OD021553 · OD · UNIVERSITY OF WASHINGTON · PI NICKERSON, DEBORAH A · 2016 to 2016
$600k
Translational Reprogramming by Regulatory T CellsR21AI143227 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI SAVAN, RAM, ZIEGLER, STEVEN F · 2019 to 2020
$487k
Defining the roles of OAS1 isoforms in RNA virus immunityF31AI140530 · NIAID · UNIVERSITY OF WASHINGTON · PI SOVEG, FRANK WILLIAM · 2019 to 2020
$74k
Regulatory T cells impose specific translatome changes in effector CD4 T cellsF32AI145283 · NIAID · UNIVERSITY OF WASHINGTON · PI SO, LOMON · 2020 to 2020
$29k
NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG006493NIAID NIH HHS F31 AI140530NIAID NIH HHS F32 AI145283NIAID NIH HHS R21 AI143227NIDDK NIH HHS K08 DK114568NIGMS NIH HHS T32 GM007270NIH HHS S10 OD021553
6 · The paper itself

Abstract

SAMD9L is an interferon-induced tumor suppressor implicated in a spectrum of multisystem disorders, including risk for myeloid malignancies and immune deficiency. We identified a heterozygous de novo frameshift variant in SAMD9L in an infant with B cell aplasia and clinical autoinflammatory features who died from respiratory failure with chronic rhinovirus infection. Autopsy demonstrated absent bone marrow and peripheral B cells as well as selective loss of Langerhans and Purkinje cells. The frameshift variant led to expression of a truncated protein with interferon treatment. This protein exhibited a gain-of-function phenotype, resulting in interference in global protein synthesis via inhibition of translational elongation. Using a mutational scan, we identified a region within SAMD9L where stop-gain variants trigger a similar translational arrest. SAMD9L variants that globally suppress translation had no effect or increased mRNA transcription. The complex-reported phenotype likely reflects lineage-dominant sensitivities to this translation block. Taken together, our findings indicate that interferon-triggered SAMD9L gain-of-function variants globally suppress translation.

Indexed as

Frameshift MutationGerm-Line MutationA549 CellsB-LymphocytesFatal OutcomeFemaleGene Expression RegulationHEK293 CellsHeterozygoteHumansInfant, NewbornInterferonsMyelodysplastic SyndromesProtein BiosynthesisTumor Suppressor ProteinsWhole Genome SequencingInterferonsSAMD9L protein, humanTumor Suppressor Proteins

Identifiers

PMID33724365
PMCPMC7970252
OpenAlexW3138171694

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.