Evidence map›Paper›PMID 33723274›Full record

ArticleScientific reports2021

Cell morphology and mechanosensing can be decoupled in fibrous microenvironments and identified using artificial neural networks.

Edward D Bonnevie, Beth G Ashinsky, Bassil Dekky, Susan W Volk, Harvey E Smith, Robert L Mauck

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Transient inhibition of meniscus cell migration following acute inflammatory challenge.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2023
    Article
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Edward D BonnevieMcKay Orthopaedic Research Laboratory, Orthopaedic Surgery, University of Pennsylvania, Philadelphia, USA.
Beth G AshinskyTranslational Musculoskeletal Research Center, CMC VA Medical Center, Philadelphia, USA.
Bassil DekkyDepartment of Clinical Sciences and Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, USA.
Susan W VolkDepartment of Clinical Sciences and Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, USA.
Harvey E SmithMcKay Orthopaedic Research Laboratory, Orthopaedic Surgery, University of Pennsylvania, Philadelphia, USA.
Robert L MauckMcKay Orthopaedic Research Laboratory, Orthopaedic Surgery, University of Pennsylvania, Philadelphia, USA. lemauck@pennmedicine.upenn.edu.

Funding

Overall: Resource-based Center for Musculoskeletal Disorders Research (Overall Application)P30AR069619 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI LOUIS J SOSLOWSKY · 2016 to 2026
$9.1M
Dynamic Fibrous Scaffolds for Repairing Dense Connective TissuesR01AR056624 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI Jason A Burdick, Robert L Mauck · 2009 to 2026
$7.5M
The regulatory roles of type III collagen in cutaneous wound healingR01GM124091 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI VOLK, SUSAN W · 2018 to 2022
$2.1M
Type III Collagen as a suppressor of breast cancer progression and metastasisR21CA216552 · NCI · UNIVERSITY OF PENNSYLVANIA · PI VOLK, SUSAN W · 2018 to 2019
$379k
Multiscale and Multimodal Structure-Function Analysis of Intervertebral Interfaces During Degeneration and RegenerationF30AG060670 · NIA · DREXEL UNIVERSITY · PI ASHINSKY, BETH GAYLE · 2018 to 2021
$193k
Altered Mechanical Signaling in the Annulus Fibrosus in Intervertebral Disc DegenerationF32AR072478 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI BONNEVIE, EDWARD D · 2018 to 2019
$120k
RR&D Senior Research Career Scientist AwardIK6RX003416 · VA · PHILADELPHIA VA MEDICAL CENTER · PI Robert L Mauck · 2020 to 2026
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Tissue-Engineered Constructs for Treatment of Intervertebral Disc DegenerationIK2RX001476 · VA · PHILADELPHIA VA MEDICAL CENTER · PI SMITH, HARVEY E. · 2015 to 2020
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Tissue Engineered Total Disc Replacement in a Large Animal ModelI01RX002274 · VA · PHILADELPHIA VA MEDICAL CENTER · PI MAUCK, ROBERT L, SMITH, HARVEY E. · 2017 to 2025
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NCI NIH HHS R21 CA216552NIAMS NIH HHS F32 AR072478NIAMS NIH HHS P30 AR069619NIAMS NIH HHS R01 AR056624NIA NIH HHS F30 AG060670NIGMS NIH HHS R01 GM124091RRD VA I01 RX002274RRD VA IK2 RX001476RRD VA IK6 RX003416
6 · The paper itself

Abstract

Cells interpret cues from and interact with fibrous microenvironments through the body based on the mechanics and organization of these environments and the phenotypic state of the cell. This in turn regulates mechanoactive pathways, such as the localization of mechanosensitive factors. Here, we leverage the microscale heterogeneity inherent to engineered fiber microenvironments to produce a large morphologic data set, across multiple cells types, while simultaneously measuring mechanobiological response (YAP/TAZ nuclear localization) at the single cell level. This dataset describing a large dynamic range of cell morphologies and responses was coupled with a machine learning approach to predict the mechanobiological state of individual cells from multiple lineages. We also noted that certain cells (e.g., invasive cancer cells) or biochemical perturbations (e.g., modulating contractility) can limit the predictability of cells in a universal context. Leveraging this finding, we developed further models that incorporate biochemical cues for single cell prediction or identify individual cells that do not follow the established rules. The models developed here provide a tool for connecting cell morphology and signaling, incorporating biochemical cues in predictive models, and identifying aberrant cell behavior at the single cell level.

Indexed as

Cell Physiological PhenomenaCellular MicroenvironmentMechanotransduction, CellularModels, BiologicalAlgorithmsAnimalsCell Line, TumorCell NucleusCellsFibroblastsHumansMiceNeural Networks, ComputerTumor Microenvironment

Identifiers

PMID33723274
PMCPMC7961147

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.