Evidence map›Paper›PMID 33723042›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

A conformational switch driven by phosphorylation regulates the activity of the evolutionarily conserved SNARE Ykt6.

Kaitlyn McGrath, Shivani Agarwal, Marco Tonelli, Mykola Dergai, Anthony L Gaeta, Andrew K Shum, Jessica Lacoste, Yongbo Zhang, Wenyu Wen, Daayun Chung and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 4 countries.

Kaitlyn McGrathDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.ORCID 0000-0002-3151-0439
Shivani AgarwalDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.
Marco TonelliThe National Magnetic Resonance Facility at Madison, University of Wisconsin, Madison, WI 53706.ORCID 0000-0002-7700-5745
Mykola DergaiDepartment of Fundamental Neurosciences, University of Lausanne, 1005 Lausanne, Switzerland.
Anthony L GaetaDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35401.ORCID 0000-0003-2959-7990
Andrew K ShumDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.
Jessica LacosteDepartment of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Yongbo ZhangIntegrated Molecular Structure Education and Research Center, Department of Chemistry, Northwestern University, Evanston, IL 60208.ORCID 0000-0002-8216-1371
Wenyu WenInstitutes of Biomedical Sciences, School of Basic Medical Sciences, Fudan University, Shanghai 200032, China.ORCID 0000-0002-0798-4730
Daayun ChungDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.
Grant WiersumCenter for Structural Genomics of Infectious Diseases, Northwestern University, Chicago, IL 60611.
Aishwarya ShevadeDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI 53211.
Sofia ZaichickDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.
Damian B van RossumDivision of Experimental Pathology, Department of Pathology, Penn State College of Medicine, Hershey, PA 17033.
Ludmilla ShuvalovaCenter for Structural Genomics of Infectious Diseases, Northwestern University, Chicago, IL 60611.ORCID 0000-0003-1702-6998
Jeffrey N SavasDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.ORCID 0000-0002-8173-5580
Sergei KuchinDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI 53211.ORCID 0000-0002-1621-8456
Mikko TaipaleDepartment of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Kim A CaldwellDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35401.ORCID 0000-0003-1580-6122
Guy A CaldwellDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35401.ORCID 0000-0002-8283-9090
Dirk FasshauerDepartment of Fundamental Neurosciences, University of Lausanne, 1005 Lausanne, Switzerland.ORCID 0000-0002-1040-4282
Gabriela CaraveoDepartment of Neurology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611; gabriela.piso@northwestern.edu.
Northwestern University · USUniversity of Alabama · USUniversity of Lausanne · CHUniversity of Toronto · CAUniversity of Wisconsin–Milwaukee · USFudan University · CNPenn State Milton S. Hershey Medical Center · USUniversity of Wisconsin–Madison · US

Funding

Neuronal roles of Parkinsons Disease Vps13C in regulating autophagy and calcium dynamicsR01NS117750 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CARAVEOPISO, GABRIELA, KRAINC, DIMITRI · 2020 to 2024
$2.4M
MECHANISMS AND MODULATORS OF RESILIENCE TO DOPAMINERGIC NEURODEGENERATIONR15NS104857 · NINDS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI CALDWELL, GUY A · 2018 to 2018
$422k
NINDS NIH HHS R01 NS117750NINDS NIH HHS R15 NS104857
6 · The paper itself

Abstract

Ykt6 is a soluble

Indexed as

Conserved SequenceModels, MolecularProtein ConformationAmino AcidsAutophagyCarrier ProteinsCell MembraneEvolution, MolecularPhosphorylationProtein BindingProtein Interaction Domains and MotifsR-SNARE ProteinsStructure-Activity RelationshipAmino AcidsCarrier ProteinsR-SNARE ProteinsYKT6 protein, humancalcineurinconformationParkinson’s diseaseSNAREYkt6

Identifiers

PMID33723042
PMCPMC8000380
OpenAlexW3136229026

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.