Evidence map›Paper›PMID 33722201›Full record

ArticleBMC microbiology2021

Utilization of L-glutamate as a preferred or sole nutrient in Pseudomonas aeruginosa PAO1 depends on genes encoding for the enhancer-binding protein AauR, the sigma factor RpoN and the transporter complex AatJQMP.

Benjamin R Lundgren, Joseph M Shoytush, Ryan A Scheel, Safreen Sain, Zaara Sarwar, Christopher T Nomura

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Predicting Strain-Specific Metabolic Capabilities in the GenusComputational and structural biotechnology journal · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Glutamate potentiates susceptibility ofFrontiers in microbiology · 2025
    Article
  8. Article
  9. Article
  10. Discovery of cyanophycin dipeptide hydrolase enzymes suggests widespread utility of the natural biopolymer cyanophycin.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. The Regulatory Functions of σInternational journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Benjamin R LundgrenDepartment of Chemistry, State University of New York - College of Environmental Science and Forestry, Syracuse, 1 Forestry Drive, Syracuse, New York, 13210, USA. brlundgr@syr.edu.
Joseph M ShoytushDepartment of Chemistry, State University of New York - College of Environmental Science and Forestry, Syracuse, 1 Forestry Drive, Syracuse, New York, 13210, USA.
Ryan A ScheelDepartment of Chemistry, State University of New York - College of Environmental Science and Forestry, Syracuse, 1 Forestry Drive, Syracuse, New York, 13210, USA.
Safreen SainDepartment of Biology, The College of New Jersey, 2000 Pennington Road, Ewing, NJ, 08628, USA.
Zaara SarwarDepartment of Biology, The College of New Jersey, 2000 Pennington Road, Ewing, NJ, 08628, USA.
Christopher T NomuraDepartment of Biological Sciences, University of Idaho, 875 Perimeter Drive, Moscow, ID, 83844, USA.
College of New Jersey · USSUNY College of Environmental Science and Forestry · USUniversity of Idaho · USYork University · US

Funding

Defining the inputs and outputs of enhancer-binding protein regulation in Pseudomonas aeruginosaR15GM104880 · NIGMS · COLLEGE OF ENVIRONMENTAL SCI & FORESTRY · PI LEYDET, BRIAN F. · 2013 to 2018
$1.3M
NIGMS NIH HHS R15 GM104880
6 · The paper itself

Abstract

backgroundGlutamate and aspartate are preferred nutrients for a variety of microorganisms. In the case for many Pseudomonas spp., utilization of these amino acids is believed to be dependent on a transporter complex comprised of a periplasmic-solute binding protein (AatJ), two permease domains (AatQM) and an ATP-binding component (AatP). Notably, expression of this transporter complex is hypothesized to be regulated at the transcriptional level by the enhancer-binding protein AauR and the alternative sigma factor RpoN. The purpose of the current study was to determine the biological significance of the putative aatJ-aatQMP operon and its regulatory aauR and rpoN genes in the utilization of L-glutamate, L-glutamine, L-aspartate and L-asparagine in Pseudomonas aeruginosa PAO1.

resultsDeletion of the aatJ-aatQMP, aauR or rpoN genes did not affect the growth of P. aeruginosa PAO1 on L-glutamate, L-glutamine, L-aspartate and L-asparagine equally. Instead, only growth on L-glutamate as the sole carbon source was abolished with the deletion of any one of these genes. Interestingly, growth of the aauR mutant on L-glutamate was readily restored via plasmid-based expression of the aatQMP genes, suggesting that it is the function of AatQMP (and not AatJ) that is limiting in the absence of the aauR gene. Subsequent analysis of beta-galactosidase reporters revealed that both aatJ and aatQ were induced in response to L-glutamate, L-glutamine, L-aspartate or L-asparagine in a manner dependent on the aauR and rpoN genes. In addition, both aatJ and aatQ were expressed at reduced levels in the absence of the inducing-amino acids and the regulatory aauR and rpoN genes. The expression of the aatJ-aatQMP genes is, therefore, multifaceted. Lastly, the expression levels of aatJ were significantly higher (> 5 fold) than that of aatQ under all tested conditions.

conclusionsThe primary function of AauR in P. aeruginosa PAO1 is to activate expression of the aatJ-aatQMP genes in response to exogenous acidic amino acids and their amide derivatives. Importantly, it is the AauR-RpoN mediated induction of the aatQMP genes that is the pivotal factor enabling P. aeruginosa PAO1 to effectively utilize or consume L-glutamate as a sole or preferred nutrient.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialGlutamic AcidPlasmidsPseudomonas aeruginosaRNA Polymerase Sigma 54Glutamic AcidRNA Polymerase Sigma 54AauRAcidic amino acidsEnhancer-binding proteinGlutamate utilizationPseudomonas aeruginosaRpoN

Identifiers

PMID33722201
PMCPMC7962211
OpenAlexW3137012912

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.