Evidence map›Paper›PMID 33721368›Full record

ArticleMolecular carcinogenesis2021

Computational modeling of malignant ascites reveals CCL5-SDC4 interaction in the immune microenvironment of ovarian cancer.

Soochi Kim, Youngjin Han, Se Ik Kim, Juwon Lee, HyunA Jo, Wenyu Wang, Untack Cho, Woong-Yang Park, Thomas A Rando, Danny N Dhanasekaran and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular carcinogenesis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Soochi KimDepartment of Neurology and Neurological Sciences, School of Medicine, Stanford University, Stanford, California, USA.
Youngjin HanCancer Research Institute, College of Medicine, Seoul National University, Seoul, Republic of Korea.
Se Ik KimDepartment of Obstetrics and Gynecology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Juwon LeeCancer Research Institute, College of Medicine, Seoul National University, Seoul, Republic of Korea.
HyunA JoCancer Research Institute, College of Medicine, Seoul National University, Seoul, Republic of Korea.
Wenyu WangCancer Research Institute, College of Medicine, Seoul National University, Seoul, Republic of Korea.
Untack ChoCancer Research Institute, College of Medicine, Seoul National University, Seoul, Republic of Korea.
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul, South Korea.
Thomas A RandoDepartment of Neurology and Neurological Sciences, School of Medicine, Stanford University, Stanford, California, USA.
Danny N DhanasekaranStephenson Cancer Center, The University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Yong Sang SongCancer Research Institute, College of Medicine, Seoul National University, Seoul, Republic of Korea.ORCID 0000-0001-7115-4021
Seoul National University · KRSamsung Medical Center · KRStanford University · USUniversity of Oklahoma Health Sciences Center · USVA Palo Alto Health Care System · US

Funding

Wnt signaling in muscle stem cell agingP01AG036695 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MARGARET A. GOODELL · 2011 to 2026
$29.3M
Molecular Regulation of Stem Cell QuiescenceR01AR073248 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RANDO, THOMAS A. · 2018 to 2022
$2.6M
Complement Components as Mediators of Cell and Tissue AgingR01AG055755 · NIA · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI RANDO, THOMAS A. · 2017 to 2021
$2.2M
NIAMS NIH HHS R01 AR073248NIA NIH HHS P01 AG036695NIA NIH HHS R01 AG055755
6 · The paper itself

Abstract

Fluid accumulation in the abdominal cavity is commonly found in advanced-stage ovarian cancer patients, which creates a specialized tumor microenvironment for cancer progression. Using single-cell RNA sequencing (scRNA-seq) of ascites cells from five patients with ovarian cancer, we identified seven cell types, including heterogeneous macrophages and ovarian cancer cells. We resolved a distinct polarization state of macrophages by MacSpectrum analysis and observed subtype-specific enrichment of pathways associated with their functions. The communication between immune and cancer cells was predicted through a putative ligand-receptor pair analysis using NicheNet. We found that CCL5, a chemotactic ligand, is enriched in immune cells (T cells and NK cells) and mediates ovarian cancer cell survival in the ascites, possibly through SDC4. Moreover, SDC4 expression correlated with poor overall survival in ovarian cancer patients. Our study highlights the potential role of T cells and NK cells in long-term survival patients with ovarian cancer, indicating SDC4 as a potential prognostic marker in ovarian cancer patients.

Indexed as

AscitesBiomarkers, TumorCell Line, TumorCell PolarityChemokine CCL5Disease ProgressionFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansKiller Cells, NaturalMacrophagesMiddle AgedModels, TheoreticalOvarian NeoplasmsPrognosisBiomarkers, TumorCCL5 protein, humanChemokine CCL5SDC4 protein, humanSyndecan-4ascitesintercellular communicationovarian cancersingle-cell RNA-seqtumor microenvironment

Identifiers

PMID33721368
PMCPMC8080545
OpenAlexW3138348145

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.